Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 48.1 bits (113), Expect = 3e-10
 Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 52/207 (25%)

Query: 42  QQYSISSKVPGRIDQVLVRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAE 101
           Q   + S+VPG ++++L+ +G  V+KGQL+F     E  A L +A A   +A      AE
Sbjct: 65  QNVELRSRVPGFLEEILIDEGKYVKKGQLLFKTNDEEYKAALAKASANLTSA-----IAE 119

Query: 102 NGAREQQIQAAKDQWLKAQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTE 161
             A E ++                      R+  + N  V+SE +   A           
Sbjct: 120 AKALEYEVD---------------------RLRIMVNKNVISESELKVA----------- 147

Query: 162 SAALQMYQLAKEGAREETKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHS 221
                   LAK         A L K   A  A A  +     T+I++ F G + ++    
Sbjct: 148 --------LAKH-------NAVLAKIEEAKSAYAHADTQLGYTEIKAPFSGIIDRIPHRI 192

Query: 222 GELAPQGFPVVTVVDTQDTWAVFNVRE 248
           G L  QG  +  V D       FNV E
Sbjct: 193 GSLLDQGSLLTKVSDISAVHVYFNVSE 219