Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., putative membrane fusion protein (MFP) of efflux pump from Escherichia coli BL21

 Score = 76.6 bits (187), Expect = 8e-19
 Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 9/240 (3%)

Query: 11  LTAVAVVGWIGYRFYQAYQPEPVTLQ-GQIESQQYSISSKVPGRIDQVLVRKGDQVEKGQ 69
           L   A+V W  +    A  PE   +  G+IE+ +  I+SK+ GRID +LV++G  V +G+
Sbjct: 16  LAVAAIVAW--WLLRPAGVPEGFAVSNGRIEATEVDIASKIAGRIDTILVKEGQFVREGE 73

Query: 70  LIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQWLKAQAAAEL--AE 127
           ++  + +  +  +  +AIA  K A +    A+    ++Q +    Q L  Q  AEL    
Sbjct: 74  VLAKMDTRVLQEQRLEAIAQIKEAQSAVAAAQALLEQRQSETRAAQSLVNQRQAELDSVA 133

Query: 128 KTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYT-ESAALQM--YQLAKEGAREETKQAAL 184
           K + R  +L   G +S Q+ D+ +   ++A+   ESA  Q+   + A E AR    QA  
Sbjct: 134 KRHTRSRSLAQRGAISAQQLDDDRAAAESARAALESAKAQVSASKAAIEAARTNIIQAQ- 192

Query: 185 EKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVVDTQDTWAVF 244
            +   A      + A   D+++++  DG V   +   GE+   G  V+ +VD  D +  F
Sbjct: 193 TRVEAAQATERRIAADIDDSELKAPRDGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTF 252