Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score = 67.0 bits (162), Expect = 8e-16
 Identities = 79/312 (25%), Positives = 133/312 (42%), Gaps = 31/312 (9%)

Query: 1   MKTVKTTLMTLTAVAVVGWIGYRFYQAYQPEPVTL-----QGQIESQQYSISSKVPGRID 55
           M   K  L+ +  +A++G      ++A Q   +        G+IE+ +  I++K   R+ 
Sbjct: 1   MTIAKRLLVAVALLAILGAGAAYGWRAMQGNRLPAGFASGNGRIEANEIDIATKYAARVL 60

Query: 56  QVLVRKGDQVEKGQLIFTLLSPEIDAKLEQAIAGQKAAGALAQEAENGAREQQIQAAKDQ 115
            + V +GD VE G +I TL + +++A+L  A A  +            +RE+       +
Sbjct: 61  TIPVEEGDLVEAGAVIATLDTRDLEAQLRSAEAQLRQT--------RSSREEAAALVAQR 112

Query: 116 WLKAQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTESAALQMYQLAKEGA 175
             +A  AA+  E+  +    L+  G V+EQ+ D+A+     ++ T  AAL       E A
Sbjct: 113 VSEADFAAKEMERALI----LFGKGHVAEQRVDQARN----SRRTADAAL-------EAA 157

Query: 176 REETKQAALEKARMAAGAVAEVEAYAADTKIQSWFDGEVSQVLMHSGELAPQGFPVVTVV 235
           R     A  E    AAG V  +    AD  +++     V   L   GE+   G    T++
Sbjct: 158 RSHLASAE-EAIAAAAGDVDRLADLVADGVLKAPRRSRVLYRLSEPGEVLAAGGKAATLL 216

Query: 236 DTQDTWAVFNVREDLLKHFTQGAQFTAYLPAL-NKSIEFKVTHVAVMGDFATWRSTDATQ 294
           D  + +  F +  D       GA+    L A+ + +I   VT VA    F T +  +   
Sbjct: 217 DLSNVYMTFFLPTDTAGTLALGAEARILLDAVPDTAIPAAVTFVAPRAQF-TPKQVETKS 275

Query: 295 GFDLRTFEVEAR 306
             D   F V+AR
Sbjct: 276 ERDRMMFRVKAR 287