Pairwise Alignments

Query, 324 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., secretion protein from Agrobacterium fabrum C58

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 78/301 (25%), Positives = 141/301 (46%), Gaps = 31/301 (10%)

Query: 45  SISSKVPGRIDQVLVRKGDQVEKGQLIFTL---LSPEIDAKLEQAIAGQKAAGALAQEAE 101
           ++S +V G +  V V+   +V++G L+  +   +  +  A+ E  +   KAA   +++ E
Sbjct: 51  TMSPQVSGYVVNVPVKDYQEVKQGTLLAKIDDRIYHQKQAQAEATLDTHKAALDNSRQQE 110

Query: 102 NGAREQQIQAAKDQWLKAQAAAELAEKTYLRVNNLYNDGVVSEQKRDEAQTQWQAAKYTE 161
           N A    I++++     A+A+ + A+    R +NL   GV +   ++EA    + A+   
Sbjct: 111 NAANAN-IRSSEAAVDSAEASLKQAQLASDRQDNLIKSGVGTSSLQEEAHAALEKAR--- 166

Query: 162 SAALQMYQLAKEGAREETKQAALEKARMAAGAVAEVEAYA-------ADTKIQSWFDGEV 214
            A+L   + A E +R++ +   + ++ + A AVA  EA         A+T+I++  DG +
Sbjct: 167 -ASLSQAKAALEVSRQDLQTIIVNRSSLQA-AVANAEAAVELARIDLANTEIRAPVDGRL 224

Query: 215 SQVLMHSGELAPQGFPVVTVVDTQDTWAVFNVREDLLKHFTQGAQFTAYLPALNKSIEFK 274
            +V + +G+    G  ++ VV   D W + N +E  L     G   T  + AL++    K
Sbjct: 225 GEVGVRTGQYVTAGTQLMAVV-PHDVWVIANFKETQLAGMQVGQPVTISVDALHRR---K 280

Query: 275 VT-HV-----AVMGDFATWRSTDATQGFDLRTFEVEARPVTPTE-----GLRMGMSVVVK 323
           +T HV     A   +FA  +  +AT  F      +  R V   +      L  GMSVVV 
Sbjct: 281 LTGHVERFSPATGSEFAVIKPDNATGNFVKIAQRLGVRIVIDADQPLAAELSPGMSVVVH 340

Query: 324 L 324
           L
Sbjct: 341 L 341