Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., channel protein TolC from Pseudomonas simiae WCS417

 Score = 59.7 bits (143), Expect = 2e-13
 Identities = 80/376 (21%), Positives = 150/376 (39%), Gaps = 23/376 (6%)

Query: 83  KQIVDSA-GGIDPNLIASLSPSLLPLVTHLGAAKSTITERDIFTSSIRAIWPIFTGGRIT 141
           K++V  A  G+ PNL      + +       AA +    RD  +       P+F   R  
Sbjct: 57  KEVVPQARAGLLPNLTGGADINNVRTQIDTPAATAN---RDAHSWRATLSQPLFRADRWF 113

Query: 142 AAQDAAAGKEEEAQSQLAMEIQARYEDLAKYYFSVVLAKEVLATRIAVEEGLTQHRDNAL 201
             Q AA    E+A  QL+   Q      A+ YF+V+ A++ LA+  A E    +  D + 
Sbjct: 114 QLQ-AAEATNEQAALQLSATEQNLILQSAENYFAVLRAQDNLASTKAEENAFKRQLDQSN 172

Query: 202 KLEQQGQIAHVERLQADASLDKAKVERKKAQKTLDIAQSALTQILGATETVEPSGMLFIN 261
           +    G     + LQ+ AS D A+  R  AQ+ ++ A  AL  +    +     G++   
Sbjct: 173 ERFDVGLSDKTDVLQSQASYDTARANRILAQRQVEDAFEALITLTN-RQYNSIQGIVHTL 231

Query: 262 TSLPPM----HAFIEQTLNTYPGLSLLDAKEKQASSLIKAEQGKYYPEVYLYGDYSLHED 317
             LPP+     A++E        L   +     A   +K  +  + P +     Y   ++
Sbjct: 232 PVLPPLPNDAKAWVETAGRQNLNLLASNYAVTAAEETLKQRKAGHAPTLDAVAQYEKGDN 291

Query: 318 DSLASQMKPDW-----------LVGVGVNIPLIENSGRSEQVKAANSAVNQVRYLKAQAK 366
           D+L       +            +G+ ++IP+      S QV+ + S + Q    +   +
Sbjct: 292 DALGFSNPNAFGTPYRGDVEQRTIGLRLSIPIYSGGLTSSQVRESYSRLGQTEQQREGLR 351

Query: 367 QDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQKAFSQGLSTSVDVVDAELYL- 425
           + +       +      +E+V     S+   Q  +   +  +  G    VDV+D++  L 
Sbjct: 352 RQVVENTRNLHRAVNTDVEQVQARRQSIISNQSAVEATEIGYQVGTRNIVDVLDSQRQLY 411

Query: 426 ASIRTQQSLASFNYLI 441
           AS+R   + + ++Y++
Sbjct: 412 ASVRNYNN-SRYDYIL 426



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 21/105 (20%), Positives = 44/105 (41%)

Query: 347 QVKAANSAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQK 406
           Q++AA +   Q     +  +Q+L +   + Y    +A + +    +  N  +  L    +
Sbjct: 114 QLQAAEATNEQAALQLSATEQNLILQSAENYFAVLRAQDNLASTKAEENAFKRQLDQSNE 173

Query: 407 AFSQGLSTSVDVVDAELYLASIRTQQSLASFNYLISLNKLLALSS 451
            F  GLS   DV+ ++    + R  + LA      +   L+ L++
Sbjct: 174 RFDVGLSDKTDVLQSQASYDTARANRILAQRQVEDAFEALITLTN 218