Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 498 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

 Score = 55.8 bits (133), Expect = 3e-12
 Identities = 100/412 (24%), Positives = 174/412 (42%), Gaps = 70/412 (16%)

Query: 28  EAWDLLQQQNNSLAAQRANVERYAHLKDATQNLNLPSVSVGANFTRLDQDVTLSGKQIVD 87
           E  D+      + AA+ A     A   DA +   LP + +GA   R              
Sbjct: 87  EKADIHNNDIQAAAARLAEARALARTADADR---LPQIGLGAGANR-------------- 129

Query: 88  SAGGIDPNLIASLSPSLLPLVTHLGAAKSTITERDIFTSSIRAIWPIFTGGRITAAQDAA 147
              G+D    AS  P+ +   T++GA  S   E D+F             GR++ A  AA
Sbjct: 130 -GAGLD-KATASTRPATM---TNIGATFSY--EVDLF-------------GRLSGASKAA 169

Query: 148 ----AGKEEEAQS-QLAMEIQARYEDLAKYYFSVVLAKEVLATRIAVEEGLTQHRDN--- 199
               AG+E   QS +LA++ Q      A+ Y  +   + + A R  V E +  +RD    
Sbjct: 170 RLDAAGREALLQSTRLAVQAQT-----AQTYLQL---RALDAERALVREQVEAYRDTLRL 221

Query: 200 ALKLEQQGQIAHVE--RLQADASL---DKAKVERKKAQKTLDIAQSALTQILGATETVEP 254
           + + EQ G IA ++  R+Q + S    D   ++R++AQ      + AL  ++G + +   
Sbjct: 222 SQRREQAGDIAELDVARVQTEVSSTESDALALDRQRAQ-----VEHALAVLVGDSASSFG 276

Query: 255 SGMLFINTSLPPMHAFIEQT-LNTYPGLSLLDAKEKQASSLIKAEQGKYYPEVYLYG--D 311
                 +T LP + A +  T L   P +S   +    A + +   Q  ++P++ L G   
Sbjct: 277 LRTDEWSTVLPNIPAGVPSTVLMRRPDVSAAQSAVLAAQARVGVAQAAWFPDISLTGAAG 336

Query: 312 YSLHEDDSLASQMKPDWLVGVGVNIPLIENSGRSEQVKAANSAVNQVRYLKAQAKQDLSV 371
           Y+  E   L       W VG  +++P+ +   R   V+ AN+ ++    L +   Q L  
Sbjct: 337 YASPEIGDLFKWSARSWGVGALLSLPIFDGGRREAGVQGANAQLDGA--LASYRTQALVA 394

Query: 372 LVE-KTYLEAEQALEEVTGLNS-SLNLAQENLRLRQKAFSQGLSTSVDVVDA 421
             E +  L A + L+E + + + ++  AQ    L    +  G  + +D++DA
Sbjct: 395 FQEVEDQLAAIRILQEQSVVQAQAVTSAQRATSLSDTRYRNGYISQLDLLDA 446