Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

 Score =  177 bits (448), Expect = 9e-49
 Identities = 126/438 (28%), Positives = 210/438 (47%), Gaps = 9/438 (2%)

Query: 24  LSFQEAWDLLQQQNNSLAAQRANVERYAHLKDATQNLNLPSVSVGANFTRLDQDVTLSGK 83
           LSF  A   +  +++ LAA RA V+         + L  P+V+V       + ++ L   
Sbjct: 38  LSFDAARARMVDRSDKLAAARAAVDAKELQSQGLKGLGGPTVAVSGLAYAYNANLNLDLD 97

Query: 84  QIVDSAGGIDPNLIASLSPSLLPLVTHLGAAKSTITERDI-FTSSIRAIWPIFTGGRITA 142
            +    G I   L +S+   +  +         T+   D    +SI A+WPI+ GG   A
Sbjct: 98  PLNQKLGQIGSALPSSIQSLVSRVPIPQLPNSYTLNRHDSGANASISAVWPIYLGGATDA 157

Query: 143 AQDAAAGKEEEAQSQLAMEIQARYEDLAKYYFSVVLAKEVLATRIAVEEGLTQHRDNALK 202
            +   + +  EA++            L + YF   LA+     R   E  + QH   A K
Sbjct: 158 VRGFVSAQTREAEADAEQAGHEVDTLLVQRYFGAQLAQRAATLRAQAERTIAQHDSAAQK 217

Query: 203 LEQQGQIAHVERLQADASLDKAKVERKKAQKTLDIAQSALTQILGATETVEPSGMLF-IN 261
           +   G I+ VERLQA A+ ++A+   +KA+    +A  AL + L A  TV P   LF I+
Sbjct: 218 MLSAGVISRVERLQASAAYEEARRNARKAEDDAALAGVALARTLRADGTVAPQTPLFLIS 277

Query: 262 TSLPPMHAFIEQTLNTYPGLSLLDAKEKQASSLIKAEQGKYYPEVYLYGDYSLHEDDSLA 321
           T + P+  FI+  L  +PGL  + AK+ QA  L + E+    P+V  +G   +   ++  
Sbjct: 278 TPIEPLGYFIDSALTRHPGLGKVAAKKSQAEQLHEGEEALRRPQVIAFGTREIKSGNA-- 335

Query: 322 SQMKPDWLVGVGVNIPLIENSGRSEQVKAANSAVNQVRYLKAQAKQDLSVLVEKTYLEAE 381
                DW+ G+GV   L ++  R     ++   V Q     AQA+ D+S+LVE+ +   E
Sbjct: 336 -----DWVAGLGVRWTLYDSVDRDALSASSLKQVEQAERTDAQARSDISLLVERNWRALE 390

Query: 382 QALEEVTGLNSSLNLAQENLRLRQKAFSQGLSTSVDVVDAELYLASIRTQQSLASFNYLI 441
            A  +   + +S+ LAQE ++LR     +G ST++D++DAE   A + T+++ A+ +Y+ 
Sbjct: 391 NARRQYLEMKASVELAQEVVKLRTSGLREGTSTTLDLIDAETNQAKVLTERAQAANDYVQ 450

Query: 442 SLNKLLALSSEMSSFSTY 459
           +L +LL  +     FS Y
Sbjct: 451 ALAQLLESAGLSEKFSDY 468