Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 498 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  161 bits (407), Expect = 5e-44
 Identities = 126/457 (27%), Positives = 214/457 (46%), Gaps = 25/457 (5%)

Query: 24  LSFQEAWDLLQQQNNSLAAQRANVERYAHLKDATQNLNLPSVSVGANFTRLDQDVTLSGK 83
           LSF  A   +   +  L+ +   V     +  AT++L  P VS  A+     + +++   
Sbjct: 34  LSFDAALARIDDASPGLSGEDHAVRASELIAGATRSLRRPVVSASASVIEYQKTLSVDLT 93

Query: 84  QIVDSAGGIDPNLIASLSPSLLP---------LVTHLGAAKSTI-----------TERDI 123
              D+A     + ++ L P   P         +   +GAA  TI           T   +
Sbjct: 94  GPKDNAQNATTDFLSQL-PGQFPAGLQQIVGQVTQRVGAALPTIFGAIPDTLQYQTRDTV 152

Query: 124 FTSSIRAIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYEDLAKYYFSVVLAKEVL 183
           F  +I    P++TGG I A Q  A    + A+++ A         L + YF   +A ++ 
Sbjct: 153 FRPAITVAMPLYTGGAIPAIQAGADAAVDVARAKKAGGHDVSRVGLVRGYFGQQVAAQLT 212

Query: 184 ATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKAQKTLDIAQSALT 243
            +     EG  +H  +A KLEQ G I H   LQ   + D A+    +AQ     A  AL 
Sbjct: 213 HSTRETLEGFDRHLSDAKKLEQNGVIPHARVLQVQVARDAAERAYVRAQLEEATAADALA 272

Query: 244 QILGATETVEPSGMLFINTS-LPPMHAFIEQTLNTYPGLSLLDAKEKQASSLIKAEQGKY 302
           ++L     V     LF+N++ LPP+  FI+  ++  P     DA    A + +   + +Y
Sbjct: 273 RLLDQPGGVNALTPLFVNSAPLPPVSVFIDG-IDATPRARGADAARDIARAGVGLAKSRY 331

Query: 303 YPEVYLYGDYSLHEDDSLASQMKPDWLVGVGVNIPLIENSGRSEQVKAANSAVNQVRYLK 362
            P+ + +G Y+ + D++L ++  PDW+ GV +   L+ N  R + + AA           
Sbjct: 332 RPQAFAFGSYNANRDNALPTE--PDWVAGVSLRYTLLSNFDRKKSLDAAREQERAAADAA 389

Query: 363 AQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQKAFSQGLSTSVDVVDAE 422
           AQA++D++  + + +   E A      L+S+L  A+ENLR+++ +F +G + S  +VDAE
Sbjct: 390 AQARKDVASEIVRAWNLVETARRSFLLLDSNLAAARENLRVQRVSFFEGEAPSSSLVDAE 449

Query: 423 LYLASIRTQQSLASFNYLISLNKLLALSSEMSSFSTY 459
             LAS +TQ+  A++ Y ++L  LLA S  +  F+TY
Sbjct: 450 ATLASTQTQRIAAAYEYDLALAGLLATSHRVDDFTTY 486