Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

 Score = 74.7 bits (182), Expect = 6e-18
 Identities = 64/300 (21%), Positives = 137/300 (45%), Gaps = 15/300 (5%)

Query: 168 DLAKYYFSVVLAKEVLATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVE 227
           DLAK YF  + A + LA   A      ++ D    + ++      ++L   A +D    +
Sbjct: 149 DLAKRYFVALAADDELALVQAERRATQKNLDRVSSMFERQMAKITDKLDMQARVDFLLAQ 208

Query: 228 RKKAQKTLDIAQSALTQILGATETVEPSGMLFINTSLP----PMHAFIEQTLNTYPGLSL 283
             +A+  + +++ AL +I+G   T EP   +  + +L     P+  ++ Q +   P L  
Sbjct: 209 EVEARNQVQVSREALAEIVGRPIT-EPLSRVRNDVALQAPTRPLQNWVTQAVENNPLLKS 267

Query: 284 LDAKEKQASSLIKAEQGKYYPEVYLYGDYSLHED--DSLASQMKPDWLVGVGVNIPLIEN 341
             +  + A++ ++  +G++YP++ L      ++   D+  +     ++   GV IP+   
Sbjct: 268 YQSGAEAANAAVREGKGEHYPQLSLSLSAQQNDQGYDNTQAPRSDSYVASFGVKIPIYSG 327

Query: 342 SGRSEQVKAAN----SAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLA 397
              S +V+       +A  Q+  ++ Q  ++ +      YL A+ A+E++    ++L+ A
Sbjct: 328 GSTSARVRGLYDDQLAAEEQLEGVRRQVVKETTT----AYLTAQAAVEKIRANRNALSSA 383

Query: 398 QENLRLRQKAFSQGLSTSVDVVDAELYLASIRTQQSLASFNYLISLNKLLALSSEMSSFS 457
           Q +    QKAF+ G+  +VDV+ A       R       ++++ +L  L   + E++  S
Sbjct: 384 QHSSVAAQKAFTFGVVNAVDVLTAVQNEFKARRDLLKTQYDFITNLFLLNRWAGELNQES 443