Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 467 a.a., Outer membrane protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  206 bits (523), Expect = 2e-57
 Identities = 138/460 (30%), Positives = 245/460 (53%), Gaps = 12/460 (2%)

Query: 6   LSLAICSILFMPIAHAAPLSFQEAWDLLQQQNNSLAAQRANVERYAHLKDATQNLNLPSV 65
           ++LA    L  P+A A  L + +A    Q+ +  +   R +V+      +A  +L  P++
Sbjct: 9   VALAALLALSAPVA-AQGLDYAQALQQAQEASGQVRNARMDVQAKDLKAEALAHLGGPAL 67

Query: 66  SVGANFTRLDQDVTLSGKQIVDSAGGIDPNLIASLSPSLLPLVTHLGAAKSTITERDIFT 125
           S+     R+     L    + ++AG +   +   LS   +P + +  +   T    ++ +
Sbjct: 68  SLSGFTGRVATTFNLDTSPLANAAGSLGSVVPGGLS---IPPIPNAVSVNRTF---NLHS 121

Query: 126 SSIRAIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYED-LAKYYFSVVLAKEVLA 184
             + A WPI+TGGR+ A     AGK +EA+++ A +++ +    +A+ YFS+ LA   + 
Sbjct: 122 LGLSANWPIYTGGRLEAIHGLEAGKADEARAE-ARDVEDKLSTTVAQRYFSLQLATHAVQ 180

Query: 185 TRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKAQKTLDIAQSALTQ 244
            R A  +G+  H+  A +LE  G IA  ERL+AD +LD A+ +  KAQ   +IAQ ALT+
Sbjct: 181 LRSAAAKGIADHQRAAQRLEATGLIATAERLKADVALDGARRDLAKAQSDSEIAQVALTR 240

Query: 245 ILGATETVEPSGMLFINT-SLPPMHAFIEQTLNTYPGLSLLDAKEKQASSLIKAEQGKYY 303
           +LGA      S  LF+N+ S+  + +FI+  L   P    + +K  QA   +K + G   
Sbjct: 241 LLGAALPAPLSTPLFVNSASVGTLQSFIDAGLAHNPAWDKIASKRTQADQALKLQTGGQL 300

Query: 304 PEVYLYGDYSLHEDDSLASQMKPDWLVGVGVNIPLIENSGRSEQVKAANSAVNQVRYLKA 363
           P V   G+Y+ +       Q  P+W VG+ V++PL++   R +  +AA     +V  L+ 
Sbjct: 301 PTVLAIGNYNFNRSSDKLVQ--PNWAVGILVSVPLLDRIDRGKMKEAAILDQQRVSALEE 358

Query: 364 QAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQENLRLRQKAFSQGLSTSVDVVDAEL 423
           QA++D+  L+E  +   + A  +   ++S++ LA+ENLRL+  +F Q  STS+D+ DA L
Sbjct: 359 QAQRDVPTLIESQWRALQNARAQFLSMDSTIRLARENLRLQTVSFQQSQSTSLDLTDARL 418

Query: 424 YLASIRTQQSLASFNYLISLNKLLALSSEMSSFSTYHQSA 463
            L  + T++  A+++Y+++L +LL  S +    + + Q+A
Sbjct: 419 NLLKVETERVQAAYDYVMALARLLEASGQPHRLAEFAQNA 458