Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., Outer membrane protein TolC from Methylophilus sp. DMC18

 Score = 67.4 bits (163), Expect = 1e-15
 Identities = 82/361 (22%), Positives = 152/361 (42%), Gaps = 13/361 (3%)

Query: 109 THLGAAKSTITERDIFTSSIRAIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQARYE- 167
           T LGA  S + +  +   S+    P++   + T A    A     AQ  L  +  A+   
Sbjct: 106 TTLGAVNSEL-DYSLENYSLSVRQPLYN--KETLAMYGGAKSYVSAQESLLEQETAKLIL 162

Query: 168 DLAKYYFSVVLAKEVLATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVE 227
            L   Y   + A++ +  +    E + Q    A +   +G    VE  +A ++LD AKVE
Sbjct: 163 KLVSVYLETLYAQDRVTVQARKLEAVGQQLQQAEQRYTRGSGTVVEVSEAQSNLDVAKVE 222

Query: 228 RKKAQKTLDIAQSALTQILGATETVEP----SGMLFINTSLPPMHAFIEQTLNTYPGLSL 283
             +A   L  +Q +L  + G+T  +       G+  ++ +  P+  ++      +P L+ 
Sbjct: 223 HLQANNDLQASQQSLQILTGSTHVLSAELLVDGLNQLSPAEHPLETWLALARQHHPELAA 282

Query: 284 LDAKEKQASSLIKAEQGKYYPEVYLYGDYSLHEDDS---LASQMKPDWLVGVGVNIPLIE 340
                + A   ++ +Q  +YP + L G  S  ++DS   L S+     L  + +N+PL  
Sbjct: 283 AYQNIEVAKKDVEKKQAGHYPTLDLVGVRSYSQNDSNNTLGSRFDTTTL-ALQMNVPLFA 341

Query: 341 NSGRSEQVKAANSAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLAQEN 400
               S  V+ + S +           +++   V K Y       + VT    ++  A+  
Sbjct: 342 GGYVSANVRQSASRLTASEETMTAKLREVEFNVRKYYQSLHAQQQSVTAYQQAVQSARVA 401

Query: 401 LRLRQKAFSQGLSTSVDVVDAELYLASIRTQQSLASFNYLISLNKLLALSSEMSSFSTYH 460
           L   QK F  G  T+ +V++A+  L + +   + A ++ LIS    L  SS + S  T +
Sbjct: 402 LDGTQKGFLAGFKTNHEVLEAQQKLFNNQLALTKAYYS-LISDWVNLQFSSGLLSLDTLN 460

Query: 461 Q 461
           +
Sbjct: 461 R 461