Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., outer membrane channel protein TolC from Serratia liquefaciens MT49

 Score = 57.4 bits (137), Expect = 1e-12
 Identities = 68/295 (23%), Positives = 121/295 (41%), Gaps = 13/295 (4%)

Query: 168 DLAKYYFSVVLAKEVLATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVE 227
           D A  YF+V+ A + L+   A ++ + +  D   +    G +A  +   A ++ D     
Sbjct: 130 DTATAYFNVLSAIDSLSYTQAQKQAVYRTLDQTTQRFNVGLVAITDVQNARSNYDTVLAA 189

Query: 228 RKKAQKTLDIAQSALTQILGA--TETVEPSGMLFINTSLPPMHAFIEQTLNTYPGLSLLD 285
              A+ TLD A   L Q+ G    E    +   F       ++  +++  +    LSLL 
Sbjct: 190 EVTARNTLDNALEKLRQVTGTFYPELASLNTDRFSTQRPEAVNNLLKEAESR--NLSLLS 247

Query: 286 AKEKQ--ASSLIKAEQGKYYPEVYLYGDYSLHEDDSLASQMK-PDW-----LVGVGVNIP 337
           A+  Q  A   I++ Q  Y P +      ++    +  S+   PD       VG+  N+P
Sbjct: 248 ARLSQDLAREQIRSAQTGYMPTIDFNASTAVSNTKNNGSRNSTPDADIGQNKVGLSFNMP 307

Query: 338 LIENSGRSEQVKAANSAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLNSSLNLA 397
           L      + QV+ A             A +++   V  ++     ++  +     ++  A
Sbjct: 308 LYSGGQTNSQVQQAQYNFVGASEQLESAHRNVVQTVRSSFNNVNASISSINAYKQAVVSA 367

Query: 398 QENLRLRQKAFSQGLSTSVDVVDAELYLASIRTQQSLASFNYLIS-LNKLLALSS 451
           Q +L   +  +  G  T VDV+DA   L + + Q S A + YLI+ LN   AL +
Sbjct: 368 QSSLDAMEAGYQVGTRTIVDVLDATTTLYNAKQQLSSARYTYLINQLNIKFALGT 422