Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) from Escherichia coli BW25113

 Score = 65.9 bits (159), Expect = 3e-15
 Identities = 105/456 (23%), Positives = 182/456 (39%), Gaps = 54/456 (11%)

Query: 64  SVSVGANFTRLDQDVTLSGKQIVDSAGGIDPNLIASLSPSLLPLVTHLG-AAKSTITE-- 120
           S+S   N  ++ Q   LS  ++  SA   D      ++ +  PL+  LG  A  T +   
Sbjct: 18  SLSQAENLMQVYQQARLSNPELRKSAADRDA-AFEKINEARSPLLPQLGLGADYTYSNGY 76

Query: 121 -------RDIFTSSIRAIWPIF--TGGRITAAQDAAAGKEEEAQSQLAMEIQARYEDLAK 171
                   +  ++S++    IF  +  R    Q+ AAG ++        + Q    + A 
Sbjct: 77  RDANGINSNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTYQT---DQQTLILNTAT 133

Query: 172 YYFSVVLAKEVLATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDKAKVERKKA 231
            YF+V+ A +VL+   A +E + +  D   +    G +A  +   A A  D        A
Sbjct: 134 AYFNVLNAIDVLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANEVTA 193

Query: 232 QKTLDIAQSALTQILGA--TETVEPSGMLFINTSLPPMHAFIEQTLNTYPGLSLLDAKEK 289
           +  LD A   L QI G    E    +   F      P++A +++       LSLL A+  
Sbjct: 194 RNNLDNAVEQLRQITGNYYPELAALNVENFKTDKPQPVNALLKEAEKR--NLSLLQARLS 251

Query: 290 Q--ASSLIKAEQGKYYPEVYLYGDYSLHE----------------DDSLASQMKPDWLVG 331
           Q  A   I+  Q  + P + L     + +                DDS   Q K    VG
Sbjct: 252 QDLAREQIRQAQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNK----VG 307

Query: 332 VGVNIPLIENSGRSEQVKAANSAVNQVRYLKAQAKQDLSVLVEKTYLEAEQALEEVTGLN 391
           +  ++P+ +    + QVK A             A + +   V  ++     ++  +    
Sbjct: 308 LSFSLPIYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYK 367

Query: 392 SSLNLAQENLRLRQKAFSQGLSTSVDVVDAELYLASIRTQQSLASFNYLI---------- 441
            ++  AQ +L   +  +S G  T VDV+DA   L + + + + A +NYLI          
Sbjct: 368 QAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALG 427

Query: 442 SLNK--LLALSSEMSSFSTYHQSAVALSSLHQSATA 475
           +LN+  LLAL++ +S   + +   VA  +  Q+A A
Sbjct: 428 TLNEQDLLALNNALSKPVSTNPENVAPQTPEQNAIA 463