Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., efflux transporter outer membrane subunit from Dickeya dianthicola ME23

 Score = 50.8 bits (120), Expect = 1e-10
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 8/144 (5%)

Query: 111 LGAAKSTITERDIFTSS-------IRAIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQ 163
           LG+A +T++  ++FTS        I   W +F  GRI A  + A G+E E  +   + + 
Sbjct: 330 LGSA-TTVSGSNLFTSGASQSSGVIGLRWRLFDFGRINAQINQAKGQEAETLAAYRLAVL 388

Query: 164 ARYEDLAKYYFSVVLAKEVLATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDK 223
              ED+   + ++V  +E         + L++ RD A    Q G ++ +E LQAD S+ +
Sbjct: 389 RATEDVENAFSALVNNEEQAHVLTQGVDSLSRARDAAFAAYQHGTLSLIEVLQADESMLR 448

Query: 224 AKVERKKAQKTLDIAQSALTQILG 247
           A   R +AQ     A  A  + LG
Sbjct: 449 ASDARLQAQAESARAAVAAFKALG 472



 Score = 38.9 bits (89), Expect = 4e-07
 Identities = 61/289 (21%), Positives = 109/289 (37%), Gaps = 41/289 (14%)

Query: 32  LLQQQNNSLAAQRANVERYAHLKDATQNLNLPSVSVGANFTRLDQDVTLSGKQIVDSAGG 91
           L Q+QN  LA   A V +      A     LPS ++    +R  Q V     ++++S  G
Sbjct: 71  LAQEQNLDLAQASARVIQARAGLGAANAALLPSGNISGQASRAYQSVETPLGKVLNSTPG 130

Query: 92  IDPNLIASLSPSLLPLVTHLGAAKSTITERDIFTSSIRAIWPIFTGGRITAAQDAAAGKE 151
            D                  G A         + + + A W +   G +   ++AA  + 
Sbjct: 131 FD----------------RYGNA---------YEADLGASWELDVFGGLRRGREAALAEY 165

Query: 152 EEAQSQLAMEIQARYEDLAKYYFSVVLAKEVLATRIAVEEGLTQHRDNAL----KLEQQG 207
           + +++ +A    A     A  Y ++      L  R+ V     Q + + L    +L  +G
Sbjct: 166 QASEAGVAATRLAVAAQTADIYITI----RGLQARLNVARRQVQTQQDLLATINRLYDKG 221

Query: 208 QIAHVERLQADASLDKAKVERKKAQKTLDIAQSALTQILGATETVEPSGMLFINTSLPPM 267
             A ++  QA+ +L + +      Q  LD A +AL  +LG+      +  +    S  P 
Sbjct: 222 LAAELQVRQAEGALAQVQASVPVLQTALDTAMNALDVMLGSAPGTNRA--VLAEASAIPA 279

Query: 268 HAFIEQT------LNTYPGLSLLDAKEKQASSLIKAEQGKYYPEVYLYG 310
              I  T      L   P L + + +   +++ I     +YYP+  L G
Sbjct: 280 APQITATGTPGELLRRRPDLIVAERRLAASNARIGVAIAEYYPKFSLSG 328