Pairwise Alignments

Query, 476 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., efflux transporter outer membrane subunit from Dickeya dadantii 3937

 Score = 48.5 bits (114), Expect = 5e-10
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 8/144 (5%)

Query: 111 LGAAKSTITERDIFTSS-------IRAIWPIFTGGRITAAQDAAAGKEEEAQSQLAMEIQ 163
           LG+A +T++  ++F++        I   W +F  GRI A  + A G+E E  +   + + 
Sbjct: 330 LGSA-TTVSSGNLFSNGASQSSGVIGLRWRLFDFGRINAQINQAKGQEAEMLAAYRLAVL 388

Query: 164 ARYEDLAKYYFSVVLAKEVLATRIAVEEGLTQHRDNALKLEQQGQIAHVERLQADASLDK 223
              ED+   + ++V  +E         + L++ RD A    Q G ++ +E LQAD S+ +
Sbjct: 389 RATEDVENAFSALVNNEEQARVLTQGVDSLSRARDAAFAAYQHGTLSLIEVLQADESMLR 448

Query: 224 AKVERKKAQKTLDIAQSALTQILG 247
           A   R +AQ     A  A  + LG
Sbjct: 449 ASDARLQAQAESARAAVAAFKALG 472



 Score = 37.7 bits (86), Expect = 9e-07
 Identities = 59/286 (20%), Positives = 106/286 (37%), Gaps = 41/286 (14%)

Query: 35  QQNNSLAAQRANVERYAHLKDATQNLNLPSVSVGANFTRLDQDVTLSGKQIVDSAGGIDP 94
           QQN  LA   A V +      A     LPS ++     R  Q V     ++++S  G D 
Sbjct: 74  QQNLDLAQASARVVQARAGLGAANAALLPSGNISGQAGRAYQSVETPLGKVLNSTPGFD- 132

Query: 95  NLIASLSPSLLPLVTHLGAAKSTITERDIFTSSIRAIWPIFTGGRITAAQDAAAGKEEEA 154
                                      + + +++ A W +   G +   ++AA  + + +
Sbjct: 133 ------------------------RYGNSYEANLGASWELDVFGGLRRGREAALAEYQAS 168

Query: 155 QSQLAMEIQARYEDLAKYYFSVVLAKEVLATRIAVEEGLTQHRDNAL----KLEQQGQIA 210
           ++ +     A     A  Y ++      L  R+ V     Q + + L    +L  +G  A
Sbjct: 169 EAGVVATRLAVAAQTADIYITI----RGLQARLNVARRQVQTQQDLLATINRLYDKGLAA 224

Query: 211 HVERLQADASLDKAKVERKKAQKTLDIAQSALTQILGATETVEPSGMLFINTSLPPMHAF 270
            ++  QA+ +L + +      Q  LD A +AL  +LGA      +  +   TS  P    
Sbjct: 225 ELQVRQAEGALAQVQASVPVLQTALDTAMNALDVMLGAAPGTHRA--VLAETSAIPAAPQ 282

Query: 271 IEQT------LNTYPGLSLLDAKEKQASSLIKAEQGKYYPEVYLYG 310
           I  T      L   P L + + +   +++ I     +YYP+  L G
Sbjct: 283 IAATGTPGELLRRRPDLIVAERRLAASNARIGVAVAEYYPKFSLSG 328