Pairwise Alignments

Query, 538 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 650 a.a., Sigma-54 dependent sensory box protein from Pseudomonas putida KT2440

 Score = 56.6 bits (135), Expect = 3e-12
 Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 10/208 (4%)

Query: 184 GANALVSSYASRRFQRA--ILGFEPEEIARLYVELDVTMSTLKEGIISIDDKGILRSINK 241
           G  +L    A +  + A  IL  +  EIA+    L+  +  +  G+ ++D++G+++S+N 
Sbjct: 174 GVLSLSEDTARKALEEALGILDTQRVEIAKRR-HLNAVLRHIPAGVAAVDNQGVVQSLNP 232

Query: 242 SACEILGLRREQALNRRLTTILPESDLYTVLATGRTDHDIELYLNKHWIIANRSPIVVEG 301
           +  ++L L    AL R L  + PE DL   L  G  + +  + L  H +++N  PI+  G
Sbjct: 233 ALAQLLDLPVSAALGRPLQQLCPELDLQQALQEGTGEENRVMRLGSHAVVSNLLPILENG 292

Query: 302 KVVGAVSSFRLRDEINELTEQLAQTREYAEMLRSQTHEHRNKLNTISGLLQMGELDAVQQ 361
           +  G V + +    +    +++  TR      R      R +L+ ++G  +    + +Q 
Sbjct: 293 ERTGLVLTCQDITVVQRADQRIRSTR------RPGAFTARYRLDQLNGNSKANR-EMLQL 345

Query: 362 LIGQETEHYQVLIEFLRETIKDPLIAGM 389
                T H  +LI     T K+ L  G+
Sbjct: 346 AKRFATSHSTILITGESGTGKELLAQGI 373