Pairwise Alignments

Query, 538 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., PAS domain-containing protein from Pseudomonas fluorescens SBW25

 Score = 66.6 bits (161), Expect = 2e-15
 Identities = 98/357 (27%), Positives = 156/357 (43%), Gaps = 60/357 (16%)

Query: 207 EEIA---RLYVELDVTMSTLKEGIISIDDKGILRSINKSACEILGLRREQALNRRLTT-- 261
           EE+A   RL   L   +S L  G+I ID++G +R  N +AC++LGL  E  L R + T  
Sbjct: 69  EELAEKERLANRLQNLLSLLPGGVIVIDEEGRVREANPAACDMLGLPLEGELWRHVITRC 128

Query: 262 ILPESDLYTVLATGRTDHDIELYLNKHWIIANRSPIVVEGKVVGAVSSFRLRD--EINEL 319
             P  D           H+I L   +   IA RS     G++V       L D  E   L
Sbjct: 129 FAPRED---------DGHEISLKDGRRLSIATRSLDAEPGQLV------LLNDLTETRHL 173

Query: 320 TEQLAQTREYA---EMLRSQTHEHRNKLNTISGLLQMGELDAVQQLIGQETEHYQVLIEF 376
            +QLA+    +    M+ S  H+ R  L+  + L+    L   Q  +         L E 
Sbjct: 174 QDQLARHERLSSLGRMVASLAHQIRTPLS--AALIYASHLTDEQLPVATHQRFAGRLKER 231

Query: 377 LRE---TIKDPLI-AGMLLGKTERARELGLELMVEDGARLETLPIHIK------------ 420
           L E    ++D L+ A   L  T+R     L   ++  A      +H++            
Sbjct: 232 LHELEHQVRDMLVFARGELPLTDRITPAELMQALQAAAATHIQDVHVRWQCDSHLGELLC 291

Query: 421 -AEDVVTILGNLIDNAFEATLTAIRTLSPVPPERRVIEVSISDFGNEIILEVDDQGCGL- 478
             + +V  L NLI+NA +A+           P+ R ++V + +    + L + D G G+ 
Sbjct: 292 NRDTLVGSLLNLIENATQAS----------GPDAR-LKVHLYNREQNLRLCISDSGSGIE 340

Query: 479 PKELEHWQLTEKGVSSKAVQNRGVGLFLVKQLADRYQGQLDMHSK-AQGTRMTVYLP 534
           P  L+  +L E   ++K     G+GL +VK +A  +QG+L +HS+  +GT   + LP
Sbjct: 341 PAVLQ--RLGEPFFTTK-TNGTGLGLTVVKAVARAHQGELQLHSRVGRGTCALMTLP 394