Pairwise Alignments

Query, 538 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 703 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score = 48.9 bits (115), Expect = 6e-10
 Identities = 82/356 (23%), Positives = 140/356 (39%), Gaps = 62/356 (17%)

Query: 227 IISIDDKGILRSINKSACEILGLRREQALNRRLTTILPES-------DLYTVLATGRTDH 279
           I++ D +G++   N S     G   +Q +      +  +        DL+  +  GR   
Sbjct: 362 ILTTDSRGVIDYANSSFYRFTGFEPDQVIGATPRILKSDETPPEVFVDLWQTIRAGREWR 421

Query: 280 DIELYLNK-----HWIIANRSPIVVEGK----VVGAVSSF----RLRDEINELTEQLAQT 326
             EL   +     +W     SP++ E       VG         R+   + EL  +L ++
Sbjct: 422 G-ELVNRRRDGQTYWASVVISPVLDEESGLCGFVGMQEDISERKRIEGRVAELVAELKRS 480

Query: 327 REYAEMLRS-QTHEHRNKLNTISGLLQMGELDAVQQLIGQETEHYQVLIEFLRETIKDPL 385
            E  E      +H+ R  L  I+  L +           +  E +    +  R    D +
Sbjct: 481 NEELENFAYVASHDLRQPLRMINSYLGLLRKRLAASFDQEAEEFFAFASDGARRL--DLM 538

Query: 386 IAGML----LGKTERARELGLELMVEDGARLETLPIHIK--------AEDVVTILG---- 429
           I  +L    +GK      L L  +V DG  ++ L + I+        A  + TI G    
Sbjct: 539 IVDLLEFSRIGKQSTREMLDLNGVVADG--MQNLAVAIRDCGAEISVAPGLPTIPGDRSE 596

Query: 430 ------NLIDNAFEATLTAIRTLSPVPPERR-VIEVSISDFGNEIILEVDDQGCGLPKEL 482
                 NLI NA          L   P ER+ V+++S  D G E IL V D G G+  E 
Sbjct: 597 LTRLFQNLIGNA----------LKYCPEERKPVVDISCRDGGREWILSVRDNGIGIEAEC 646

Query: 483 --EHWQLTEKGVSSKAVQNRGVGLFLVKQLADRYQGQLDMHSKA-QGTRMTVYLPK 535
             + + + ++ VS    +  G+GL + +++A+ + G++ + S    G+   V LPK
Sbjct: 647 LEKVFGIFQRMVSRDKYEGTGIGLAVCRKIAEHHGGRIWVESVVDHGSTFHVALPK 702