Pairwise Alignments

Query, 477 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., EmrB/QacA subfamily drug resistance transporter from Pseudomonas simiae WCS417

 Score =  157 bits (397), Expect = 7e-43
 Identities = 119/464 (25%), Positives = 213/464 (45%), Gaps = 25/464 (5%)

Query: 4   PVDRKTFLGIFFTVFLPMFLAAVDQTLLATATPAIVRDLGNLQLS-SWIAIGYMLASAAS 62
           P+D KT   + + V +  F+ ++D T+L TA PA+ RDL    L    + I YML  A  
Sbjct: 6   PLDAKTARWLPWVVAIAFFMQSLDGTILNTALPAMARDLAENPLRMQGVVIAYMLTVALL 65

Query: 63  VPVYGWLGDQYGRKPMLMIALSIFALGSVICAFAMNMPWLVAGRIVQGLGSGGLMSLSQA 122
           +P  GW+ D++G K +   A+ +F++GS++CA + ++  LV  R++QGLG   ++ + + 
Sbjct: 66  IPASGWIADRFGTKKIFFGAIMLFSIGSLLCALSSSLTMLVGARVIQGLGGALMLPVGRL 125

Query: 123 LIGELVPPRERARFQGYFSSLFAVASIGGPVLGGVLVTYLSWQWLFWFNLPLVGIALYRL 182
           ++    P  E  R  G+ +    +  + GP +GG +V YL+W W+F  NLP+  I  Y  
Sbjct: 126 VVLRAYPRSELVRIMGFITIPGLLGPLLGPTMGGWMVQYLTWHWIFLINLPVGMIGCY-- 183

Query: 183 ARFQFVQSSRKSEAS-IDVAGLILFPSMMTLIIYWLSAGGH-YFPWFSVTSISLVSAFVL 240
           A ++F+   R +E +  D  G +LF + M LI   +   G  + P   V  + L      
Sbjct: 184 AVWKFIPDLRGTERTRFDGIGFLLFGAAMILITIAMEGLGELHLPHLRV-MLLLFGGLAC 242

Query: 241 TSLLFIAQQKRVTASFLPLRLLARREIHIPLLSTFIFAACLFALIFFLPIFLQLGLRVNA 300
            +  ++         F P+ L   R   + +L          AL F +P+ LQ+ L  + 
Sbjct: 243 LAAYWLRAGHIDNPLFSPV-LFKTRTFAVGILGNLFARLGSGALPFLVPLLLQVALGYSP 301

Query: 301 AQSGLLLIPLSCGIIGGAYTTGKVIAKTGVPKFLP----VFGMSLSSCAFAV-LAMFSLS 355
           +++G+ ++PL+   +        +I   G    L       G+ L+S         + L 
Sbjct: 302 SEAGMSMLPLAAAAMFAKSVARPLIEHLGYRIVLTGNTLALGIMLASMGLVTEHTPYPLL 361

Query: 356 APVVSAIAALCGLGLGTVMPSTQVLVQTLAGKANLGRITAMASLSRSLGASVGTAFFGTL 415
             +++ + A+  L    +   T + +      +    ++ +A LS SLG +   A     
Sbjct: 362 LGMLAVLGAINSLQFTAMNTVTLIDLDDAQASSGNSLLSVVAQLSLSLGVACAGA----- 416

Query: 416 IYSLLPGLSPNSGLQAIAALPQSEILHAFQIGFAVAALLALLGA 459
              LL G +  +G   +       +L AFQ+ F    ++A+L A
Sbjct: 417 ---LLGGFTAETGNDGV-----ESVLGAFQLTFLTVGIMAMLAA 452