Pairwise Alignments

Query, 477 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 510 a.a., Inner-membrane proton/drug antiporter (MSF type) of tripartite multidrug efflux system from Variovorax sp. SCN45

 Score =  155 bits (391), Expect = 4e-42
 Identities = 120/441 (27%), Positives = 207/441 (46%), Gaps = 25/441 (5%)

Query: 13  IFFTVFLPMFLAAVDQTLLATATPAIVRDLGNLQLS----SWIAIGYMLASAASVPVYGW 68
           I  ++ L   + A+D T+   A P +    G+LQ S    +W+   Y++ASA ++P+ GW
Sbjct: 15  ITISIMLATIMQALDTTIANVALPHMQ---GSLQASQDQITWVLTSYIVASAIALPLTGW 71

Query: 69  LGDQYGRKPMLMIALSIFALGSVICAFAMNMPWLVAGRIVQGLGSGGLMSLSQALIGELV 128
           L   +GR+ + +I++  F + S +C  A ++  +VA R++QG+    L+ LSQA++ ++ 
Sbjct: 72  LCGHWGRRRVFIISVIGFTVASALCGLATSLVGIVAARLLQGIFGAALVPLSQAVLLDIN 131

Query: 129 PPRERARFQGYFSSLFAVASIGGPVLGGVLVTYLSWQWLFWFNLPLVGIALYRLARFQFV 188
           P  +  +    + +   V  I GP+LGG L     W+W+F+ NLP+   A + +AR  ++
Sbjct: 132 PREKVGQAMAIWGAGIMVGPILGPLLGGWLTENFDWRWVFFINLPVGIFAFWGIAR--YL 189

Query: 189 QSSRKSEASIDVAGLILFPSMMTLIIYWLSAGGHYFPWFSVTSISLVSAFVLTSLLFIAQ 248
             SR     +D+ G +     + ++  +L   G    WF    I L +A  L +  F   
Sbjct: 190 PESRPQGEKLDIFGFVTLSLAIGMLQLFLDR-GEQLDWFDSWEIKLEAAAALVAFGFFVV 248

Query: 249 QKRVT--ASFLPLRLLARREIHIPLLSTFIFAACLFALIFFLPIFLQLGLRVNAAQSGLL 306
                   SF    LL  R     LL  FI    LFA +  LP FLQ  +      +G +
Sbjct: 249 HTWTVQGVSFFDRDLLKDRNFVTGLLFAFIVGMILFATMALLPNFLQGLMGYPVVYTGQV 308

Query: 307 LIPLSCGIIGGAYTTGKVIAKTGVPKFLPV-FGMSLSSCAFAVLAMFSLSAPVVSAIAAL 365
             P   G +      G+++ K  V   + V FG++  S          + + ++     +
Sbjct: 309 TAPRGVGTMIAMIIVGRLVQKVDVRAIMAVGFGLTAFSLYQMTRLTLQMDSTLIIVSGFI 368

Query: 366 CGLGLG-TVMPSTQVLVQTLAGKANLGRITAMASLSRSLGASVGTAFFGTLI-------- 416
            GLG+G T +P +     TLA +    + T + SL R++G+SVG +    L+        
Sbjct: 369 QGLGIGFTFVPLSTATFATLAPRLR-NQGTPIFSLLRNIGSSVGISIVQALLTEGSSKAH 427

Query: 417 YSLLPGLSPNSGLQAIAALPQ 437
             +   ++P  G QA++ LPQ
Sbjct: 428 AQIAATVAP--GNQALSTLPQ 446