Pairwise Alignments

Query, 477 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 510 a.a., multidrug efflux MFS transporter permease subunit EmrB from Dickeya dadantii 3937

 Score =  131 bits (330), Expect = 5e-35
 Identities = 109/425 (25%), Positives = 191/425 (44%), Gaps = 21/425 (4%)

Query: 3   QPVDRKTFLGIFFTVFLPMFLAAVDQTLLATATPAIVRDLG--NLQLSSWIAIGYMLASA 60
           +P++  T   +   + L  F+  +D T+   A P I  +LG  N Q  +W+   + +A+A
Sbjct: 4   KPLEGMTLALMTIALSLATFMQVLDSTIANVAIPTIAGNLGASNSQ-GTWVITSFGVANA 62

Query: 61  ASVPVYGWLGDQYGRKPMLMIALSIFALGSVICAFAMNMPWLVAGRIVQGLGSGGLMSLS 120
            S+P+ GWL  ++G   + + A  +F L S +C  + ++  L+  R++QGL +G ++ LS
Sbjct: 63  ISIPITGWLAKRFGEVRLFIWATVLFTLTSWLCGMSTSLEMLIVSRMLQGLVAGPIIPLS 122

Query: 121 QALIGELVPPRERARFQGYFSSLFAVASIGGPVLGGVLVTYLSWQWLFWFNLPLVGIALY 180
           Q+L+    PP +R      +S    VA I GP+LGG +     W W+F+ N+PL GI + 
Sbjct: 123 QSLLLNNYPPAKRGIALALWSMTVVVAPIFGPILGGWISDNYHWGWIFFINVPL-GIVVV 181

Query: 181 RLARFQFVQSSRKSE-ASIDVAGLILFPSMMTLIIYWLSAGGHYFPWFSVTSISLVSAFV 239
            +          K+E   ID  GL+L  + +  +   L  G     WF+ T I +++   
Sbjct: 182 LITLQTLRGRETKTEIRPIDTIGLVLLAAGIGCLQMMLDRGKE-LDWFNSTEIVVLAVVA 240

Query: 240 LTSL-LFIAQQKRVTASFLPLRLLARREIHIPLLSTFIFAACLFALIFFLPIFLQLGLRV 298
           + SL + +  +       + L L   R   I  L T +     F  I  LP  LQ+    
Sbjct: 241 VVSLTVLVVWELTDDHPVVDLSLFKMRNFTIGCLCTSLAFMLYFGAIVLLPQLLQVVFGY 300

Query: 299 NAAQSGLLLIPLSCGIIGGAYTTGKVIAKTGVPKFLPVFGMSLSSC------AFAVLAMF 352
            A  +GL   P+    +  +   G+ + K  + + +    +  + C       F     F
Sbjct: 301 TATWAGLASAPVGLMPVILSPLIGRFMHKLDMRRLVTFSFIMYAVCFYWRAYTFEPAMDF 360

Query: 353 SLSA--PVVSAIAALCGLGLGTVMPSTQVLVQTLAGKANLGRITAMASLSRSLGASVGTA 410
             SA    V   A  C       MP T + +  L  +  +   +++++ +R+L  S+GT+
Sbjct: 361 GASAWPQFVQGFAVAC-----FFMPLTTITLSGLPPE-RMAAASSLSNFARTLAGSIGTS 414

Query: 411 FFGTL 415
              TL
Sbjct: 415 ITTTL 419