Pairwise Alignments

Query, 429 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas sp. S08-1

 Score =  100 bits (250), Expect = 5e-26
 Identities = 63/165 (38%), Positives = 96/165 (58%), Gaps = 16/165 (9%)

Query: 262 AQRHVYIDNLTRLNNRHFLNKI----STK--FIEHPHSIAAMIDIDHFKKINDQYGHITG 315
           ++++  +D LT   NR +L  +    ST+  F   P S+  M+D+DHFK  NDQ+GH+ G
Sbjct: 171 SEQNANVDILTGCFNRRWLEHVFERESTRCAFSHQPMSML-MLDVDHFKAYNDQHGHLAG 229

Query: 316 DRILQAVASCLRKNVRDGDTIIRFGGEEFLLLFQAHSNKEAWYMLDRLRQRVKDDHSLY- 374
           D  L  VA  LR  +R  D+++R+GGEEF++L       E+  + +RLRQ ++   S Y 
Sbjct: 230 DYALCLVAHTLRNQLRPKDSMVRYGGEEFVILLPELDADESRTIGERLRQSLEQISSFYS 289

Query: 375 ------GTTISIGFTFID--GSLPAAISRADTALYQAKEAGRNQV 411
                 G T+SIG   +     L + I+RAD ALY+AK+ GRN++
Sbjct: 290 PVGILPGVTVSIGMAQMQDKDGLESLIARADAALYKAKQQGRNRL 334