Pairwise Alignments
Query, 556 a.a., lipid A modification system glycine--protein ligase AlmE from Vibrio cholerae E7946 ATCC 55056
Subject, 4293 a.a., peptide synthase from Pseudomonas simiae WCS417
Score = 164 bits (416), Expect = 5e-44
Identities = 153/519 (29%), Positives = 243/519 (46%), Gaps = 58/519 (11%)
Query: 56 YTYQEMTDMALSLSDYWHLQGV---QRVAILSVRDLAAYSAIWASYLGGMTYIPLNARAT 112
+TY E+ + L GV Q VA+L+ R+L I S+ G Y+PL+
Sbjct: 3712 WTYDELNRRSNGLGHALIAAGVGLDQPVALLAERNLDLLGMIIGSFKAGAGYLPLDPGLP 3771
Query: 113 TEQIQETLIATQCDSIMVDAQQLSRLSSLLETCIDRLHIYALPDVDVEPLRQQYPQHTFH 172
+++++ L ++ ++ + LL+ +L ++ + P R + P
Sbjct: 3772 SQRLRSILDLSRTPLLVCTEASREQAIELLDGFDCQLLVW-----EEIPARGENPG---- 3822
Query: 173 TVQITEQDVELLVVKYHLDNEHEYAYIMQTSGSTGKPKRIAVSYSN-LHCYISQIDKLFP 231
V DN AY++ TSGSTG PK + V L+ +S++ L
Sbjct: 3823 -------------VYSAPDN---LAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-A 3865
Query: 232 LNAQDRVGQYSDLTFDLSVHDIFYSLISGACLYVVPELAKLSPAEFIHHHQ---LTVWLS 288
L+ D + Q + +FD+SV + + GA + +VP P + H Q +TV S
Sbjct: 3866 LSDADVIAQTASQSFDISVWQFLAAPLFGARVDIVPNTIAHDPQGLLEHVQAQGITVLES 3925
Query: 289 VPTVIELALQRQTLTPHSLPSLRLSFFCGQALLHDLAEQW-QQATQQPVINLYGPTECTI 347
VP++I+ L + + L LR G+A+ +LA QW Q+ + ++N YGP EC+
Sbjct: 3926 VPSLIQGMLAQDRI---GLDGLRWMLPTGEAMPPELAHQWLQRYPEIGLVNAYGPAECSD 3982
Query: 348 AVTYHRF-VAHSGMASVPIGRAFEEECLAIINEQGELMRFESAPEGYRGELLLSGKQLVK 406
V ++R +A + +PIG + L +++ EL+ P+G GEL ++G + +
Sbjct: 3983 DVAFYRVDLASTRGTYLPIGTPTDNNRLYLLDGALELV-----PQGAVGELCVAGTGVGR 4037
Query: 407 GYLNDPLNTQSAF----FQHEGRLWYRSGDIVTK-SNGVLIHLGRRDHQVKIAGQRVELE 461
GY++DPL T F F G YR+GD+ + S+GVL ++GR DHQVKI G R+EL
Sbjct: 4038 GYVSDPLRTAPVFVPNPFGAPGERLYRTGDLARRRSDGVLEYVGRVDHQVKIRGYRIELG 4097
Query: 462 EIETVVRRVTQAHSVAIVPWPLSESGYASGTVAFVDTHTQWQPDLWLSQCKQQLNPT--- 518
EIE + + A+ + G + D P L + KQ+L
Sbjct: 4098 EIEARLHEQPEVRDAAVGVQEGMNGKHLVGYLVAAD--EALNPSERLDRIKQRLRAELPE 4155
Query: 519 -FVPKRWYAIEQLPRNANGKTDIKALQQ----QLASQTY 552
VP W +++LP NANGK D KAL QL SQ Y
Sbjct: 4156 YMVPLHWLWLDRLPLNANGKLDRKALPALEIGQLQSQDY 4194
Score = 137 bits (344), Expect = 1e-35
Identities = 139/503 (27%), Positives = 220/503 (43%), Gaps = 59/503 (11%)
Query: 57 TYQEMTDMALSLSDYWHLQGVQR---VAILSVRDLAAYSAIWASYLGGMTYIPLNARATT 113
T+ ++ A L+ Y +GV VAI + R + A G Y+PL+ T
Sbjct: 1143 TFAQLHTQANRLAHYLRDKGVGPDVCVAIAAERSPQLLIGLLAIIKAGGAYVPLDPDYPT 1202
Query: 114 EQIQETLIATQCDSIMVDAQQLSRLSSLLETCI---DRLHIYALPDVDVEPLRQQYPQHT 170
E++ L + ++ L ++ + C+ D LH+ + P Q P
Sbjct: 1203 ERLAYMLKDSGVHLLLTQTALLEQVPAACGVCVIAMDSLHLDSWPT--------QPPG-- 1252
Query: 171 FHTVQITEQDVELLVVKYHLDNEHEYAYIMQTSGSTGKPKRIAVSYSNLHCYISQIDKLF 230
+ H DN AY++ TSGSTG+PK + ++++ L + + +
Sbjct: 1253 ---------------LHLHGDN---LAYVIYTSGSTGQPKGVGITHAALAERLQWMQATY 1294
Query: 231 PLNAQDRVGQYSDLTFDLSVHDIFYSLISGACLYVVPELAKLSP---AEFIHHHQLTVWL 287
PLN D + Q + ++FD+SV + F+ LI+G L + P A+ + H +T
Sbjct: 1295 PLNETDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPHRIAQLVQEHGVTTLH 1354
Query: 288 SVPTVIELALQRQTLTPHSLPSLRLSFFCGQALLHDLAEQWQQATQQPVI---NLYGPTE 344
VP +++L + + SLR F G+AL +L + Q P + N YGPTE
Sbjct: 1355 FVPPLLQLFIDEPLVA--ECTSLRRLFSGGEALPAELRN--RVLAQLPAVQLHNRYGPTE 1410
Query: 345 CTIAVTYHRFVAHSGMASVPIGRAFEEECLAIINEQGELMRFESAPEGYRGELLLSGKQL 404
I VT+ A G S PIGR +++EQ P G GEL + G L
Sbjct: 1411 TAINVTHWHCRAEDGERS-PIGRPLGNVICRVLDEQ-----LNPVPLGVPGELCIGGIGL 1464
Query: 405 VKGYLNDPLNTQSAFF-QHEGRLWYRSGDIVT-KSNGVLIHLGRRDHQVKIAGQRVELEE 462
+GYL T F H+G YR+GD ++GV+ +LGR D QVK+ G RVE EE
Sbjct: 1465 ARGYLGRAGLTAERFVADHQGARLYRTGDRARWSADGVIEYLGRLDQQVKLRGFRVEPEE 1524
Query: 463 IETVVRRVTQAHSVAIVPWPLSESGYASGTVAFVDTHTQWQPDLWLSQCKQQLNPTFVPK 522
IE + + + + A+V L G G + H + +L VP
Sbjct: 1525 IEARMLAL-EGIAQAVV---LVRDGQLIG---YFTAHGDLDEQQVKTALAAELPEYMVPA 1577
Query: 523 RWYAIEQLPRNANGKTDIKALQQ 545
++ +P + +GK D +AL +
Sbjct: 1578 LLMRLDAMPLSPSGKLDRRALPE 1600
Score = 135 bits (340), Expect = 3e-35
Identities = 144/517 (27%), Positives = 219/517 (42%), Gaps = 50/517 (9%)
Query: 46 APALWVKQKTYTYQEMTDMALSLSDYWHLQGVQ---RVAILSVRDLAAYSAIWASYLGGM 102
APAL T +Y+E+ A L+ +GV RV + R L + A G
Sbjct: 2180 APALTFAGVTLSYRELDARANRLAWMLRERGVGPQVRVGLALPRSLEMVIGLLAILKAGG 2239
Query: 103 TYIPLNARATTEQIQETLIATQCDSIMVDAQQLSRLSSLLETCIDRLHIYALPDVDVEPL 162
Y+PL+ +++ + + ++ DA L L T + + L D D+ P+
Sbjct: 2240 AYVPLDPEYPLDRLHYMIEDSGIGLLLSDAAMFEALGELPAT----VACWCLED-DL-PV 2293
Query: 163 RQQYPQHTFHTVQITEQDVELLVVKYHLDNEHEYAYIMQTSGSTGKPKRIAVSYSNLHCY 222
YP + + + AY++ TSGSTGKPK + VS+ + +
Sbjct: 2294 LANYPADALPFISLPQHQ----------------AYLIYTSGSTGKPKGVVVSHGEIAMH 2337
Query: 223 ISQIDKLFPLNAQDRVGQYSDLTFDLSVHDIFYSLISGACLYVVPELAKLSPAE----FI 278
+ + + F + A D + + FD + + L+SGA VV AE I
Sbjct: 2338 CAAVIERFGMRADDCELHFYSINFDAATERLLVPLLSGA--QVVLRAQGQWDAEEICGLI 2395
Query: 279 HHHQLTVWLSVPTVIELALQRQTLTPHSLPSLRLSFFCGQALLHDLAEQWQQATQ-QPVI 337
H + + P+ Q +LP +R+ G+AL + ++ + A Q Q
Sbjct: 2396 RTHGINILGFTPSYGSQLAQWLATRQQTLP-VRMCITGGEALTGEHLQRIRAAFQPQVFF 2454
Query: 338 NLYGPTECTIAVTYHRFVAH--SGMASVPIGRAFEEECLAIINEQGELMRFESAPEGYRG 395
N YGPTE + H G ASVPIG + I++ L+ P+G G
Sbjct: 2455 NAYGPTETVVMPLASLAPEHLEEGAASVPIGSIIGDRVAYILDADLALV-----PQGATG 2509
Query: 396 ELLLSGKQLVKGYLNDPLNTQSAF----FQHEGRLWYRSGDIV-TKSNGVLIHLGRRDHQ 450
EL + G L +GY P T F F G YR+GD+V + +G++ +LGR DHQ
Sbjct: 2510 ELYVGGAGLAQGYHQRPGMTAERFVADPFARNGGRLYRTGDLVRQRVDGLVEYLGRIDHQ 2569
Query: 451 VKIAGQRVELEEIETVVRRVTQAHSV--AIVPWPLSESGYASGTVAFVDTHTQWQPDLWL 508
VKI G R+EL EIET R+ + +V A+V + SG D D
Sbjct: 2570 VKIRGFRIELGEIET---RLLEHDAVREAVVLALDAPSGKQLVAYLVSDAEHVALRDALK 2626
Query: 509 SQCKQQLNPTFVPKRWYAIEQLPRNANGKTDIKALQQ 545
+ K L VP ++ +P ANGK D +AL Q
Sbjct: 2627 AHLKAHLPDYMVPAHLIVLDSMPLTANGKLDRRALPQ 2663
Score = 60.8 bits (146), Expect = 1e-12
Identities = 78/334 (23%), Positives = 129/334 (38%), Gaps = 50/334 (14%)
Query: 195 EYAYIMQTSGSTGKPKRIAVSYSNLHCYISQIDKLF--PLNAQDRVGQYSDLTFDLS-VH 251
+ A++ TSGST PK + VS+ NL I + F LN D + + L D+ +
Sbjct: 160 DIAFLQYTSGSTALPKGVQVSHGNLVANEVLIRRGFGIDLNPDDVIVSWLPLYHDMGLIG 219
Query: 252 DIFYSLISGA-CLYVVPELAKLSPA---EFIHHHQLTVW--------LSVPTVIELALQR 299
+ + SG C+ + P P E I + T+ L V E AL+R
Sbjct: 220 GLLQPIFSGVPCVLMSPAYFLGRPLRWLEAISEYGGTISGGPDFAYRLCSERVSETALER 279
Query: 300 QTLTPHSLPSLRLSFFCGQALLHDLAEQWQQA------TQQPVINLYGPTECTI------ 347
L+ R+++ + + D E++ + T YG E T+
Sbjct: 280 LDLS-----RWRVAYSGSEPIRLDTLERFAEKFAACGFTPNHFFASYGLAEATLFVAGGS 334
Query: 348 -------------AVTYHRFVAHSGMASVPIGRAFEEECLAIINEQGELMRFESAPEGYR 394
A+ +R G A + G E + I + P+ +
Sbjct: 335 RGQGIAAMRVDDQALAANRAEPGQGSAIMSCGTRQPEHAVLIADPH----TLAELPDNHV 390
Query: 395 GELLLSGKQLVKGYLNDPLNTQSAFFQHEGRLWYRSGDIVTKSNGVLIHLGRRDHQVKIA 454
GEL +G + GY +P T F QH GR W R+GD+ +G + GR + +
Sbjct: 391 GELWATGPSIAHGYWRNPEATAKTFVQHAGRRWLRTGDLGFIRDGEVYITGRLKDLLIVR 450
Query: 455 GQRVELEEIE-TVVRRVTQAHSVAIVPWPLSESG 487
G + ++IE T+ R V + + ++E G
Sbjct: 451 GHNLYPQDIEQTIEREVEVVRKGRVAAFAVNEQG 484