Pairwise Alignments

Query, 445 a.a., cytochrome ubiquinol oxidase subunit I from Vibrio cholerae E7946 ATCC 55056

Subject, 525 a.a., cytochrome d oxidase from Agrobacterium fabrum C58

 Score =  209 bits (532), Expect = 2e-58
 Identities = 112/307 (36%), Positives = 171/307 (55%), Gaps = 3/307 (0%)

Query: 2   LDTLMLSRIQFAANISFHILFPTITIALGWILVFFKWRYLRTQVSEWLDLYYFWVKVFAL 61
           LD + LSR+QFA    +H LF  +TI L  ++   +  Y+ T  + W  +  FW  +F +
Sbjct: 3   LDIVALSRLQFAVTALYHFLFVPLTIGLSVVIAIMETVYVMTGRTIWRQMTKFWGTLFGI 62

Query: 62  TFALGVVSGITMSFQFGTNWPGFMERVGNVAGPLLGYEVMTAFFMEATFLGVMLFGRGRV 121
            F LGV +GI M FQFG NW  +   VG++ G  L  E M AFF+EATF+G+  FG  ++
Sbjct: 63  NFVLGVSTGIVMEFQFGMNWSYYSHYVGDIFGAPLAIEGMMAFFLEATFVGLFFFGWDKL 122

Query: 122 PEWLHTLSTVLVAVGTSLSAFWILVLNSWMHTPAG--YEVIDGVVHVTSWKEVIFNPSMP 179
            +  H ++T  VA+G++ SA WIL+ N WM  P G  +      + VT +  V+FNP   
Sbjct: 123 SKLGHLVATWCVAIGSNFSALWILIANGWMQNPTGSAFNPQTMRMEVTDFFAVLFNPVAQ 182

Query: 180 YRLAHTLLASALTASFLIAGISAYQVLRNAKHQAAKMGLKVAVSVAALAIPVQILVGDLH 239
            +  HT+ A  +TAS  + G+SA+ VL+      AK  + VA S    +    +++GD  
Sbjct: 183 AKFVHTVSAGYVTASIFVLGVSAWYVLKGRHVDLAKRSMTVAASFGLASALSVVVLGDES 242

Query: 240 GLNTLEHQPAKIAAMEGVWQTERG-APLLLFALPNEETRSNDFALGIPNLASLILTHDMN 298
           G  + EHQ  K+A++E +W+TE   AP      P++E R   FA+ IP +  LI T  ++
Sbjct: 243 GYLSTEHQKMKLASIEAMWETEPAPAPFTAIGFPDQEARETHFAVKIPWVMGLIGTRSLD 302

Query: 299 GEIVGLD 305
            +I G++
Sbjct: 303 TQIPGIN 309



 Score = 75.5 bits (184), Expect = 4e-18
 Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 8/139 (5%)

Query: 306 AFAPDHPPVAPLFFGFRVMVGVGVLMLLVS----WFGAWRVWRNKPLPKPYMYALIGMTF 361
           A A   P V  LF+ FR+MVG+G+  +L++    +  A R   + PL        + +  
Sbjct: 380 AAADTIPHVPTLFWSFRIMVGLGMFFILLTATFFYLSARRRLDHYPLLLKVAVFAVPLP- 438

Query: 362 SGWVATIAGWYVTEIGRQPWLVSGVLRTAEAVTPVASSSVGISLTLYLITYVVLLVAYVH 421
             W+A   GW V E GRQPW++ GVL TA AV+ +++S+V I+L  ++  Y VL +  + 
Sbjct: 439 --WIAAEMGWVVAEFGRQPWIIEGVLPTAAAVSSLSASTVLITLLCFIAIYTVLFIVEMG 496

Query: 422 TLFYLARKTGHAPQVSPSS 440
            +    RK G  P   P +
Sbjct: 497 LMLKAIRK-GPDPDHEPEA 514