Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., ubiquinol oxidase subunit II from Pseudomonas simiae WCS417

 Score =  219 bits (558), Expect = 8e-62
 Identities = 124/332 (37%), Positives = 183/332 (55%), Gaps = 18/332 (5%)

Query: 5   LPEIYLLLLGFTVFMYAVLDGYDLGVGILLPR-NDVAQRDRMIASIGPFWDANETWLVLA 63
           LP I+ +++ F + MY V+DG+DLG+GIL P       RD M+ ++ P WD NETWLVL 
Sbjct: 5   LPLIWAVIIIFGIMMYVVMDGFDLGIGILFPFIPGKTDRDVMMNTVAPVWDGNETWLVLG 64

Query: 64  VGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDH-WDLCFKIGS 122
              L  AFP A+S++ + LYLP  LMLI LI RGVAF+FR KAK DHK H WD  F  GS
Sbjct: 65  GAALFGAFPLAYSVVLSALYLPLILMLIGLIFRGVAFEFRFKAK-DHKRHLWDKAFIGGS 123

Query: 123 LLAALTQGYMIGRYVVGFESAPEAYA---------FAVLSALCVAAAYVYIGGAWLVLKT 173
           L A   QG  +G ++ G       +A         F +   + +  AY  +G  WL++KT
Sbjct: 124 LAATFFQGVALGAFIDGIPVVDRQFAGGSLDWATPFTMFCGVALIVAYALLGCTWLIMKT 183

Query: 174 EGELQVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFAT 233
           EG LQ +    +R   ++    +  VS+  P  +  +A RWF+ P +    PVPI+V  T
Sbjct: 184 EGPLQEKMHNLARPLAFVVLAVIGIVSIWTPLTHPEIASRWFTLPNLFWFLPVPILVLVT 243

Query: 234 ILVVDRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPE 293
           +  + R + R           PF   +++  L + GL  S +P I+P  ++   AA+ P+
Sbjct: 244 MYGLFRAVARHAHYT------PFLLTLVLIFLGYSGLGISLWPNIIPPSVSIWDAAAPPQ 297

Query: 294 TLMVVGIGVVIVMPTILLYTFFVYRIFKGKAT 325
           +   + +G + ++P IL YTF+ Y +F+GK T
Sbjct: 298 SQGFMLVGTLFIIPFILGYTFWSYYVFRGKVT 329