Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Variovorax sp. SCN45

 Score =  125 bits (313), Expect = 2e-33
 Identities = 102/361 (28%), Positives = 162/361 (44%), Gaps = 44/361 (12%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLP---RNDVAQRDRMIASIGPFWDANETWLVLAV 64
           I+ LL+G  +  +AV DG+DLG G+LLP   RND+ +R  +I S+GP W+ N+ WL+L  
Sbjct: 15  IWWLLIGVLLVGFAVTDGFDLGSGMLLPFAARNDIERRV-VINSVGPVWEGNQVWLILGG 73

Query: 65  GILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADH-KDHWDLCFKIGSL 123
           G +  A+P  +++ F+  YL   ++L ALI+R VAF FR+K ++   +  WD        
Sbjct: 74  GAVFAAWPQLYAVSFSGFYLAMFVILTALILRPVAFKFRSKRESPQWRARWDWVLFFSGF 133

Query: 124 LAALTQGYMIGRYVVG----FESAPEAY----------AFAVLSALCVAAAYVYIGGAWL 169
           + AL  G  +G  + G    F +    +           FA+L  L   A  V  G AWL
Sbjct: 134 VPALICGVAMGNVLQGVPFRFNNDMHIFYDGGFFGLLNPFAILCGLVSVAMLVMHGAAWL 193

Query: 170 VLKTEGELQVRAARWSRKAGWL-----AALGVLSVSLVNPWVNSAVAERWFSFPEVILLA 224
           +LKT G +  RA  +   A  L     A  GVL  + +  +  S+V +       ++   
Sbjct: 194 LLKTAGPVAERARTYGMVAAVLTIALYALAGVLLATSIGGYRISSVIDAVGPSNPMLKTV 253

Query: 225 PVPIIVFATILVVDRYLKRVPTVNDAGVQWPFFGVVL-------------IFGLSFLGLA 271
            +    +        +    P     G      G+ L             I G+  L + 
Sbjct: 254 ELHAGAWTANYAAHPWTMAAPAAGFVGALGALLGLALRRPVLSLLTAALGIAGI-ILSVG 312

Query: 272 YSFFPEIVP------GIMTAQQAASSPETLMVVGIGVVIVMPTILLYTFFVYRIFKGKAT 325
            S FP I+P        +T   ++SS  TL ++ +     +P I+ YT +VY +  GK  
Sbjct: 313 ASMFPFILPSSIDPRASLTVWDSSSSHLTLFIMLVVTAFFIPIIVAYTSWVYHVLWGKVD 372

Query: 326 D 326
           +
Sbjct: 373 E 373