Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

 Score =  106 bits (264), Expect = 1e-27
 Identities = 99/373 (26%), Positives = 160/373 (42%), Gaps = 69/373 (18%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLP---RNDVAQRDRMIASIGPFWDANETWLVLAV 64
           I+ +L+G  +  +A+ DG+D+GVG L+P   +ND  +R  MI SI P WD N+ WL+ A 
Sbjct: 10  IWWVLIGVLLVGFAITDGFDMGVGALVPIIGKND-NERRVMINSIAPHWDGNQVWLITAG 68

Query: 65  GILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADH-KDHWDLCFKIGSL 123
           G L  A+P  ++  F+  YL   + L AL +R V  D+R+K ++   +++WDL       
Sbjct: 69  GALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISASGF 128

Query: 124 LAALTQGYMIGRYVVGFESAPEAY--------------AFAVLSALCVAAAYVYIGGAWL 169
           +  +  G   G  + G       +               FA+L  L      +  G AWL
Sbjct: 129 IPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLLQGSAWL 188

Query: 170 VLKTEGELQVRAARWSRKAGWLAAL-------------GVLSVSLV------NPWVNSAV 210
            +KT   +  RA   ++  G L A+             G + V  +      NP     +
Sbjct: 189 QMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAASNPLNKEVI 248

Query: 211 AE--RW---FSFPEVILLAPVPIIVFATILVVDRYLKR------VPTVNDAGVQWPFFGV 259
            E   W   F    V+ LAP   ++   + V+   L +        ++ +AGV       
Sbjct: 249 REAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAGV------- 301

Query: 260 VLIFGLSFLGLAYSFFPEIVPG------IMTAQQAASSPETLMVVGIGVVIVMPTILLYT 313
             IF   F     + FP ++P        +T   A SS  TL ++ +  V+++P IL YT
Sbjct: 302 --IFTAGF-----AMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYT 354

Query: 314 FFVYRIFKGKATD 326
            + Y    G+  D
Sbjct: 355 IWSYYKMFGRLDD 367