Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 381 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Sphingobium sp. HT1-2

 Score =  128 bits (321), Expect = 3e-34
 Identities = 113/370 (30%), Positives = 170/370 (45%), Gaps = 62/370 (16%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLP---RNDVAQRDRMIASIGPFWDANETWLVLAV 64
           I+ LLLG  +  +A+ DG+DLG   LLP   R D  +R  +I S+G  W+ N+ W +L  
Sbjct: 13  IWWLLLGVLLIGFALTDGFDLGSAALLPFAGRTD-EERRMIINSVGATWEGNQVWFILGG 71

Query: 65  GILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRA-KAKADHKDHWDLCFKIGSL 123
           G +  A+P  +++ F+  YL   L+L ALI+R V F +R+ K  A  +  WD    +G L
Sbjct: 72  GAIFAAWPFVYAVSFSGFYLAMFLVLSALILRPVGFKYRSKKPDARWRAGWDWALFVGGL 131

Query: 124 LAALTQGYMIGRYVVGFESAPEA--------------YAFAVLSALCVAAAYVYIGGAWL 169
           + AL  G  +G  +VG     +                 F +L+ L   A  V  G  WL
Sbjct: 132 VPALVFGVAVGNVLVGAPFRLDGDLRMFYEGSLLGLFTPFTLLTGLLSVAMLVLHGAGWL 191

Query: 170 VLKTEGELQVRAARWSRKAGWLA----ALGVLSVSL----------------VNPWVNSA 209
            LKTEG +  R   + + A  L+    A+G L V+                  NP +  A
Sbjct: 192 SLKTEGPVLQRVRLYGQGAAILSILLFAIGGLFVAWSGMGYRVDGVIDPNGPSNPHLGGA 251

Query: 210 VA------ERWFSFPEVILLAPVPIIVFA-TILVVDRYLKRVPTVNDAGVQWPFFGVVLI 262
           VA      + + + P ++L    PI+ FA  +L +     R  T+  AG      G++  
Sbjct: 252 VAAAGAWLDNYAAHPWMLL---APILGFAGPVLALLGIRGRRDTLVFAGSSIANVGIIST 308

Query: 263 FGLSFLGLAYSFFPEIVP------GIMTAQQAASSPETLMVVGIGVVIVMPTILLYTFFV 316
            GL       S FP I+P        +TA  A+SS  TL  + I  VI +P +L YT + 
Sbjct: 309 VGL-------SMFPFILPSSIDPGSSLTAWNASSSHGTLFTMLICTVIFLPIVLAYTAWA 361

Query: 317 YRIFKGKATD 326
           Y++  G+ TD
Sbjct: 362 YKVMFGRVTD 371