Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  321 bits (823), Expect = 1e-92
 Identities = 162/329 (49%), Positives = 216/329 (65%), Gaps = 3/329 (0%)

Query: 3   QYLPEIYLLLLGFTVFMYAVLDGYDLGVGILLP-RNDVAQRDRMIASIGPFWDANETWLV 61
           + LP I+L ++G  +  Y +LDGYDLGVG+LLP      Q+D MI+SIGPFWDANETWLV
Sbjct: 8   EVLPLIFLAVMGLALLAYVILDGYDLGVGLLLPLAESKEQKDTMISSIGPFWDANETWLV 67

Query: 62  LAVGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIG 121
           L VG+LL+AFP AH L+   LYLP A+MLI LI+RGVAFDFR KA   +   W+  F +G
Sbjct: 68  LGVGVLLVAFPMAHGLVLQALYLPVAVMLIGLILRGVAFDFRVKAPTKYVPFWNRAFFVG 127

Query: 122 SLLAALTQGYMIGRYVVGFESAPEAYAFAVLSALCVAAAYVYIGGAWLVLKTEGELQVRA 181
           SLLA+ +QG+M+G Y+ GF+      +F++  AL + AAY+ +G  WL++KTEGELQ  A
Sbjct: 128 SLLASASQGWMLGSYITGFDKGWLGLSFSLGIALTLPAAYILLGAGWLIMKTEGELQAHA 187

Query: 182 ARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATILVVDRYL 241
            RW+ +  W   + ++++S   P VN  V  +WFS PEV  L P+P+        V R++
Sbjct: 188 VRWAARVLWPMGVALVAISAATPLVNPGVVAKWFSVPEVFGLMPIPLSCAIAFFAV-RWV 246

Query: 242 KRVPTVNDAGVQWPFF-GVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPETLMVVGI 300
              P V  AG  W  F   VLIF L+F GLAYS FP+IV G M   QAA S  +L V+ I
Sbjct: 247 VTHPNVVKAGYGWVVFAATVLIFVLAFFGLAYSIFPDIVIGRMNVWQAAVSTGSLTVIFI 306

Query: 301 GVVIVMPTILLYTFFVYRIFKGKATDLSY 329
           GV I +P I++YT ++YR+F GKA  L+Y
Sbjct: 307 GVAITLPVIIIYTIYMYRVFWGKARALTY 335