Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., putative Cytochrome bd2, subunit II from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  214 bits (546), Expect = 2e-60
 Identities = 120/329 (36%), Positives = 179/329 (54%), Gaps = 15/329 (4%)

Query: 5   LPEIYLLLLGFTVFMYAVLDGYDLGVGILLPR-NDVAQRDRMIASIGPFWDANETWLVLA 63
           LP I+  ++ F   MY V+DG+DLGVGIL P   D   RD M+ S+ P WD NETWLVL 
Sbjct: 5   LPVIWFAIIVFATLMYIVMDGFDLGVGILFPFIRDKHDRDVMVNSVAPVWDGNETWLVLG 64

Query: 64  VGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSL 123
              L  AFP A+++I   L +P  +ML+ LI RGVAF+FR KA   H+  WD  F +GS+
Sbjct: 65  GAGLFGAFPLAYAVITDALTIPLVVMLLGLIFRGVAFEFRFKATESHRAFWDKSFIVGSI 124

Query: 124 LAALTQGYMIGRYVVGFESAPEAYA---------FAVLSALCVAAAYVYIGGAWLVLKTE 174
           LA   QG ++G  V GF+     ++         F +   + +   Y  +G  WL++K+E
Sbjct: 125 LATFAQGVVVGAVVSGFQVEGRTFSGSQLDWLTPFNLFCGVGLVVTYALLGATWLIMKSE 184

Query: 175 GELQVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATI 234
             L  R    SR    +  L +  VS+  P  +  +AERWF+ P +    PVP++V A  
Sbjct: 185 DPLHSRMCALSRPLLIVLLLVMGGVSVWTPLTHDDIAERWFTLPNLYYFLPVPVLVLAFS 244

Query: 235 LVVDRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPET 294
           + + R +K+           PF   + +  L F GL  S +P I+P  ++   AA+ P++
Sbjct: 245 VWLWRSVKK-----PESHARPFILTLGLIFLGFSGLGISIWPNIIPPDISLYAAAAPPQS 299

Query: 295 LMVVGIGVVIVMPTILLYTFFVYRIFKGK 323
              + +G +I++P IL YTF+ Y +F+GK
Sbjct: 300 QSFMLVGALIIIPIILAYTFWSYYVFRGK 328