Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., cytochrome bd-II oxidase, subunit II (NCBI) from Escherichia coli BW25113

 Score =  121 bits (303), Expect = 3e-32
 Identities = 103/359 (28%), Positives = 166/359 (46%), Gaps = 43/359 (11%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLP---RNDVAQRDRMIASIGPFWDANETWLVLAV 64
           I+ LL+G  + ++ + DG+D+G+G LLP   RND  +R  +I S+G  W+ N+ WL+LA 
Sbjct: 10  IWWLLIGVILVVFMISDGFDMGIGCLLPLVARND-DERRIVINSVGAHWEGNQVWLILAG 68

Query: 65  GILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAK-AKADHKDHWDLCFKIGSL 123
           G L  A+P  ++  F+  Y+   L+L +L  R +AFD+R K A A  +  WD    IGSL
Sbjct: 69  GALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSL 128

Query: 124 LAALTQGYMIGRYVVG--FESAPEAYA------------FAVLSALCVAAAYVYIGGAWL 169
           +  +  G   G  ++G  F   P+               F +L  L      +  GG WL
Sbjct: 129 VPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWL 188

Query: 170 VLKTEGELQVRAARWSRKAGWLAALGVLSVSL-----VNPWVNSAVAERWFSFPEVILLA 224
            LKT G + +R+   +++A  L  L  L         ++ +V  A      S P + L+A
Sbjct: 189 QLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVA 248

Query: 225 PVP-----------IIVFATILVVDRYLKRVPTVNDAGVQWPFFGVVLI-FGLSFLGLAY 272
            +P           ++    +L     L  V  +      W F    L+ FG+ F     
Sbjct: 249 VLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA-GI 307

Query: 273 SFFPEIVPGI------MTAQQAASSPETLMVVGIGVVIVMPTILLYTFFVYRIFKGKAT 325
           + FP ++P        +T   + SS  TL ++ + V+I +P +LLYT + Y    G+ T
Sbjct: 308 TLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366