Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., cytochrome d terminal oxidase, subunit II (NCBI) from Escherichia coli BW25113

 Score =  114 bits (286), Expect = 3e-30
 Identities = 101/359 (28%), Positives = 158/359 (44%), Gaps = 42/359 (11%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGIL---LPRNDVAQRDRMIASIGPFWDANETWLVLAV 64
           I+ LL+G  +  +AV DG+D+GVG+L   L RND  +R  MI SI P WD N+ WL+ A 
Sbjct: 10  IWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRI-MINSIAPHWDGNQVWLITAG 68

Query: 65  GILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADH-KDHWDLCFKIGSL 123
           G L  A+P  ++  F+  Y+   L+L +L  R V FD+R+K +    ++ WD    IGS 
Sbjct: 69  GALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSF 128

Query: 124 LAALTQGYMIGRYVVGFESAPEAY--------------AFAVLSALCVAAAYVYIGGAWL 169
           +  L  G   G  + G     + Y               F +L+ +      +  G  +L
Sbjct: 129 VPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYL 188

Query: 170 VLKTEGELQVRAARWSRKAGWL-----AALGVLSVSLVNPWVNSAVAERWFSF----PEV 220
            ++T GEL +R    ++ A  +     A  GV  +  ++ +V  +  + + +      EV
Sbjct: 189 QMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEV 248

Query: 221 ILLA--------PVPIIVFATILVVDRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAY 272
           +  A          PI+     L V   L  + T       W F    L      L    
Sbjct: 249 VREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGI 308

Query: 273 SFFPEIVP------GIMTAQQAASSPETLMVVGIGVVIVMPTILLYTFFVYRIFKGKAT 325
           + FP ++P        +T   A SS  TL V+    V+++P ILLYT + Y    G+ T
Sbjct: 309 AMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRIT 367