Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., cytochrome d oxidase, subunit II (cydB) from Enterobacter asburiae PDN3

 Score =  212 bits (539), Expect = 1e-59
 Identities = 117/329 (35%), Positives = 178/329 (54%), Gaps = 15/329 (4%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLPR-NDVAQRDRMIASIGPFWDANETWLVLAVGI 66
           I+  ++ F   MY ++DG+DLG+G+L     D  +RD M+ S+ P WD NETWLVL    
Sbjct: 8   IWFAIIVFATLMYIIMDGFDLGIGLLFNFVGDAKERDVMVNSVAPVWDGNETWLVLGGAG 67

Query: 67  LLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSLLAA 126
           L  AFP A+++I   L +P   MLI LI RGVAF+FR KA   H+  WD  F  GSLLA 
Sbjct: 68  LFGAFPLAYAVIVDALTIPLTAMLIGLIFRGVAFEFRFKATPSHRKFWDYSFAGGSLLAT 127

Query: 127 LTQGYMIGRYVVGFESAPEAYA---------FAVLSALCVAAAYVYIGGAWLVLKTEGEL 177
            +QG ++G  + GF+     +          F +   + +  AY  +G  WL++K+EG L
Sbjct: 128 FSQGIVVGAMINGFDVEGRRFVGSALDWLTPFNLFCGIGLVVAYTLLGTTWLIMKSEGAL 187

Query: 178 QVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATILVV 237
           Q R    +R       + +  VS+  P     VA+RWF+ P      PVP++V    +++
Sbjct: 188 QARMRELTRHVLLALMVVIAVVSIWTPLGWQYVADRWFTLPNFFWFLPVPLLVGLFSVLI 247

Query: 238 DRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPETLMV 297
            R      T N A    PF   + +  L F GL  S +P I+P  +T  +AA+ P + + 
Sbjct: 248 WRL-----TRNPASHSRPFLLTLGLIFLGFSGLGISLWPNIIPPRITLWEAAAPPASQLF 302

Query: 298 VGIGVVIVMPTILLYTFFVYRIFKGKATD 326
           + +G ++++P IL+YT + Y +F+GK +D
Sbjct: 303 MLVGTLLIIPVILVYTAWSYYVFRGKVSD 331