Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., cytochrome d oxidase, subunit II (cydB) from Enterobacter asburiae PDN3

 Score =  219 bits (559), Expect = 6e-62
 Identities = 125/326 (38%), Positives = 176/326 (53%), Gaps = 15/326 (4%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLPRNDVAQ-RDRMIASIGPFWDANETWLVLAVGI 66
           I+ +++ F   MY V+DG+DLG+GIL P    A  RD M+ S+ P WD NETWLVL    
Sbjct: 8   IWFVIIVFATLMYIVMDGFDLGIGILFPATQNADDRDVMVNSVAPVWDGNETWLVLGGAA 67

Query: 67  LLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADHKDHWDLCFKIGSLLAA 126
           L  AFP A+++I   L +P  LMLI LI RGVAF+FR KA   H+  WD  F  GS+LA 
Sbjct: 68  LFGAFPLAYAVIVDALTIPLTLMLIGLIFRGVAFEFRFKATPAHRPFWDKAFIGGSILAT 127

Query: 127 LTQGYMIGRYVVGFESAPEAY---------AFAVLSALCVAAAYVYIGGAWLVLKTEGEL 177
            TQG  +G  + GF     AY         AF +   + +  AY  +G  WLV+K+E  L
Sbjct: 128 FTQGVTVGAVINGFTVTGRAYTGGPVDWFTAFNLFCGVGLVVAYALLGSTWLVMKSENAL 187

Query: 178 QVRAARWSRKAGWLAALGVLSVSLVNPWVNSAVAERWFSFPEVILLAPVPIIVFATILVV 237
           Q R    S+    +    + ++SL  P    A+A RWF+ P +  L PVP +V    L  
Sbjct: 188 QQRMREVSKTLLIVLLAFIAAISLWTPLAQPAIAARWFTLPNLFYLLPVPALVVIFSLYQ 247

Query: 238 DRYLKRVPTVNDAGVQWPFFGVVLIFGLSFLGLAYSFFPEIVPGIMTAQQAASSPETLMV 297
            R L      N      PF   + +  L F GL  S +P I+P  +T  QAA+  ++   
Sbjct: 248 WRCLN-----NPNSHSRPFILTLGLIFLGFSGLGISIWPHIIPPSITLWQAAAPTQSQGF 302

Query: 298 VGIGVVIVMPTILLYTFFVYRIFKGK 323
           + +G ++++P IL+YTF+ Y +F+GK
Sbjct: 303 MLVGALLIIPVILVYTFWSYYVFRGK 328