Pairwise Alignments

Query, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Escherichia coli ECRC100

 Score =  120 bits (301), Expect = 5e-32
 Identities = 101/358 (28%), Positives = 164/358 (45%), Gaps = 41/358 (11%)

Query: 8   IYLLLLGFTVFMYAVLDGYDLGVGILLP--RNDVAQRDRMIASIGPFWDANETWLVLAVG 65
           I+ LL+G  + ++ + DG+D+G+G LLP    D  +R  +I S+G  W+ N+ WL+LA G
Sbjct: 10  IWWLLIGVILVVFMISDGFDMGIGCLLPLVARDDDERRIVINSVGAHWEGNQVWLILAGG 69

Query: 66  ILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAK-AKADHKDHWDLCFKIGSLL 124
            L  A+P  ++  F+  Y+   L+L +L  R +AFD+R K A A  +  WD    IGSL+
Sbjct: 70  ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129

Query: 125 AALTQGYMIGRYVVG--FESAPEAYA------------FAVLSALCVAAAYVYIGGAWLV 170
             +  G   G  ++G  F   P+               F +L  L      +  GG WL 
Sbjct: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQ 189

Query: 171 LKTEGELQVRAARWSRKAGWLAALGVLSVSL-----VNPWVNSAVAERWFSFPEVILLAP 225
           LKT G + +R+   +++A  L  L  L         ++ +V  A      S P + L+A 
Sbjct: 190 LKTVGVIHLRSQLSTKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAV 249

Query: 226 VP-----------IIVFATILVVDRYLKRVPTVNDAGVQWPFFGVVLI-FGLSFLGLAYS 273
           +P           ++    +L     L  V  +      W F    L+ FG+ F     +
Sbjct: 250 LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA-GIT 308

Query: 274 FFPEIVPGI------MTAQQAASSPETLMVVGIGVVIVMPTILLYTFFVYRIFKGKAT 325
            FP ++P        +T   + SS  TL ++ + V+I +P +LLYT + Y    G+ T
Sbjct: 309 LFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366