Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 656 a.a., macrolide ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  108 bits (271), Expect = 4e-28
 Identities = 105/420 (25%), Positives = 184/420 (43%), Gaps = 44/420 (10%)

Query: 11  MAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHVSGGYATQTHG 70
           M   + R +LT+L +      +  +LAVGEG +  ++  +     N+I++SG   T  + 
Sbjct: 276 MWINRFRTALTLLGIIIGVASVVVMLAVGEGSKRQVMAQMGAFGSNIIYLSG---TSPNP 332

Query: 71  RFHEGQALSLTEQDSQVLAALPMVKHALPSAEWQELITFADKRSWMMPYAVKSEYQAMNK 130
           R   G    +T  D   LAALP V+  +P    +  + F++           + +  +  
Sbjct: 333 RTPLG---IVTLDDVHALAALPQVQRIMPVNGSEVGVRFSNVDYMAYVGGNDTNFPEIFN 389

Query: 131 LRLLPGGRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWFSGGELEQDPVGQIAKIGAH 190
             ++ G  +F   DE     V V+G+++  +LF             E +P+GQ   I   
Sbjct: 390 WPVVEGN-YFTAADERAAATVAVIGHRVREKLFKG-----------EVNPIGQYILIENV 437

Query: 191 EFTVIGVLAKN---SGNIEQGSPIDYSGFTPFST--WQRFHPNQAISGINLEPRVGSDRQ 245
            F VIGVLA+    SGN +    +    +T  S   +  ++P   +       +V     
Sbjct: 438 PFQVIGVLAEKGAASGNKDSDDRVAIP-YTAASVRLFGNYNPEYVVIAAADARKVRETEV 496

Query: 246 ALAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFLLRLQSFLGIIGFITLAVASL 305
           A+   +Q++   K    L +    M+Q    +Q +       L   LG I  I+L V  +
Sbjct: 497 AIDQLMQKLHNGKRDYELTNNA-AMIQAEARTQNT-------LSLMLGSIAAISLLVGGI 548

Query: 306 GITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITMGMGGIAGLGVTFAMVRLL 365
           G+ N+M  TV+  TR+IG+RMA GA    I   +L ++++   +GG+ G+ +   +  +L
Sbjct: 549 GVMNIMLMTVRERTREIGIRMATGARQRDILRQFLTEAVMLSVVGGLCGIALALLVGGVL 608

Query: 366 AAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPANHAAKVTPLQALQSE 425
                        L +   + SL  +        V G+V  ++PA  AA++ P++AL SE
Sbjct: 609 V------------LAKVAVQFSLLAVFGAFGCALVTGVVFGFMPARKAARLDPVKALTSE 656