Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., lipoprotein-releasing system transmembrane subunit LolE from Vibrio cholerae E7946 ATCC 55056

 Score = 48.9 bits (115), Expect = 3e-10
 Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 26/191 (13%)

Query: 258 KYAASLQDQQIVMVQDHFLSQ----KSMQQ---FLLR----LQSFLGIIGFITLAVASLG 306
           K A  LQ  QIV    + L++     S QQ   FL R    +++ + ++  + + VAS  
Sbjct: 227 KVADVLQATQIVRDVGNQLNEYVYLHSWQQKYGFLYRDIQLVRTIMYLVMVLVIGVASFN 286

Query: 307 ITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLIT--MG--MGGIAGLGVTFAMV 362
           I + +   VK    +I +   +GAT   I+  ++ Q + +  +G  +G + G+ V F + 
Sbjct: 287 IVSTLMMAVKDRAGEIAILRTMGATDGLIKRIFVWQGVFSGVLGSVVGSVLGMVVAFNLT 346

Query: 363 RLLAAIP-------LQGNPIY-DHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPANHAA 414
            L+  +        L G+  + D L   V     + +V+V  T  V+ ++A W PA  A+
Sbjct: 347 PLIKGLEHLIGHQFLSGDIYFVDFLPSQV---EWADVVLVSGTAIVLSLLATWYPARRAS 403

Query: 415 KVTPLQALQSE 425
           ++ P Q L S+
Sbjct: 404 RLNPAQVLSSK 414



 Score = 25.0 bits (53), Expect = 0.004
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 365 LAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGI 403
           LA +PL+    Y HLG  V  +S+ V  ++  T  V  +
Sbjct: 203 LALLPLEDAQAYAHLGSGVTGISVKVADVLQATQIVRDV 241