Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., ABC-type antimicrobial peptide transport system, permease component from Sphingobium sp. HT1-2

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 96/421 (22%), Positives = 175/421 (41%), Gaps = 46/421 (10%)

Query: 15  KLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHVSGGYATQTHG---- 70
           K+R  LT L +      +  ++ +G G  + +   I +   N++ +  G      G    
Sbjct: 17  KMRSFLTTLGIIIGVAAVVTMVTLGNGATAAVREQISSLGANVLQLRPGQGFGRGGGGPR 76

Query: 71  --RFHEGQALSLTEQDSQVLAALPMVKHALPSAEWQELITFADKRSWMMP-YAVKSEYQA 127
              F E    ++  Q + V A  P+V+ +  +          +  +W    Y   S Y  
Sbjct: 77  PPNFKEADLTAIENQLTGVRAVAPVVQSSGTA--------IYEGNNWSTTVYGTTSAYSQ 128

Query: 128 MNKLRLLPGGRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWFSGGELEQDPVGQIAKI 187
           +    +  G R F P +E   + V ++G  +   LF               DP+G+  +I
Sbjct: 129 VQSWNVSEG-RLFMPDEEEAGKSVCIIGNTVRTNLFQGN------------DPIGKRMRI 175

Query: 188 GAHEFTVIGVLAKNSGNIEQGSPIDYSGFTPFSTWQRFHPNQAISGINLEPRVGSDRQAL 247
                 V+GVLA   G    G   D          +RF  ++ IS I +      D   +
Sbjct: 176 KGVSCQVVGVLATR-GQGGFGDQDDVVVMPIKFVQRRFTGDRDISQIMVAVDDAYDSATV 234

Query: 248 AATVQQVLK--RKYAASLQDQQIVMVQDHFLSQKSMQQFLLRLQSFLGIIGFITLAVASL 305
             +++Q+++  RK  A  +D   V   D      ++      L   +  +  I+L V  +
Sbjct: 235 QDSLEQLMRERRKIKAGAEDNFNVF--DTKQISDTLTGTTTILTQIVAAVAAISLLVGGI 292

Query: 306 GITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITMGMGGIAGLGVTFAMVRLL 365
           GI N+M  +V   TR+IG+R+A+GA    +   +L ++++   MGG+  +G+  A++  +
Sbjct: 293 GIMNIMLVSVTERTREIGIRLAIGAVAREVLMQFLVEAIVLSCMGGL--IGLVIALIASV 350

Query: 366 AAIPLQGNPI-YDHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPANHAAKVTPLQALQS 424
              PL   P  +D      P+++L    I  +    +G+V  + PA  AA + P+ AL+ 
Sbjct: 351 GIAPLMKVPFTFD------PQVNL----IAFLFSAAIGVVFGYFPARRAASLNPIDALRH 400

Query: 425 E 425
           E
Sbjct: 401 E 401