Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., MacB family efflux pump subunit from Dickeya dianthicola ME23

 Score =  105 bits (262), Expect = 4e-27
 Identities = 92/422 (21%), Positives = 183/422 (43%), Gaps = 34/422 (8%)

Query: 5   RQIMQEMAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHVSGGY 64
           R  ++ M+A+++R  LT+L +      +  ++A+G+G +  ++  I     + + +  G 
Sbjct: 260 RMALRAMSAQRIRTFLTMLGIIIGIASVVSVVALGKGSQQQMLEHINAMGTSTLEIFSG- 318

Query: 65  ATQTHGRFHEGQALSLTEQDSQVLAALPMVKHALPSAEWQELITFADKRSWMMPYAVKSE 124
             +  G  H     +L   D + L   P +    P+      + +A+K   +    V  +
Sbjct: 319 --KDFGDMHSAAIQTLRVNDLRPLEQQPYIHSVTPTVSTSATLRYANKAVSVSVSGVGEQ 376

Query: 125 YQAMNKLRLLPGGRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWFSGGELEQDPVGQI 184
           +  +    +L  G  F+P+   +  +  V+      +LF   E           +P+GQ+
Sbjct: 377 FFTVRGY-VLSEGNGFSPLSVERLTQEAVIDQNTRNKLFPNGE-----------NPLGQV 424

Query: 185 AKIGAHEFTVIGVLAKNSGNIEQGSPIDYSGFTPFSTWQRFHPNQA-ISGINLEPRVGSD 243
             +G     +IGV  +       GS  + + + P++T  R    Q+ +  I +  +   D
Sbjct: 425 IFLGQLPCRIIGVATRKQSGF--GSDENLNVWVPYTTVMRRMVGQSYLRSITVRVKDNID 482

Query: 244 RQALAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFLLRLQSFLGIIGFITLAVA 303
                  + Q+L R++         VM  D    +++++Q    +   +  I  I+L V 
Sbjct: 483 LSVAQQGITQILTRQHG---NKDFFVMNTDSI--RQTIRQTTATMTLLVSAIALISLIVG 537

Query: 304 SLGITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITMGMGGIAGLGVTFAMVR 363
            +G+ N+M  +V   TR+IGVRMAVGA    I   +L ++++    GGI  LGV  +++ 
Sbjct: 538 GIGVMNIMLVSVTERTREIGVRMAVGARTGDIMQQFLIEAVLVCLCGGI--LGVILSLLA 595

Query: 364 LLAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPANHAAKVTPLQALQ 423
              A  + G              S  V+ +     +++G++  + PA  AA++ P+ AL+
Sbjct: 596 GAIASRISGVTFV---------YSAPVMALAFFCSSLIGVIFGFFPARRAARLQPIHALE 646

Query: 424 SE 425
            E
Sbjct: 647 RE 648