Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., ABC-type antimicrobial peptide transport system, permease component from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 91.3 bits (225), Expect = 5e-23
 Identities = 101/438 (23%), Positives = 192/438 (43%), Gaps = 46/438 (10%)

Query: 4   IRQIMQEMAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHV--- 60
           I++ ++ + + +LR  LT L +A     + G+L   +G+++ I  +      N   V   
Sbjct: 7   IKEALRSIKSNRLRTILTGLIIAIGITALVGMLTAIDGMKAQIEESFSGLGANNFDVRSK 66

Query: 61  --SGGYATQTHGRFHEGQALSLTEQ-------DSQVLAALPMVKHALPSAEWQELITFAD 111
             SG   T++     + + +S  +         S+ +A +          +    IT  +
Sbjct: 67  NTSGQRVTRSGVTEKQFKPVSYKDALDFRKGYSSRGMATVSTRVSGSTEVKRGSEITNPN 126

Query: 112 KRSWMMPYAVKSEYQAMNKLRLLPGGRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWF 171
            R       V   Y  + K + +  GR F+ V+      V ++G ++   LF   E    
Sbjct: 127 VRI----IGVDENY-VLIKGQNIEEGRNFSNVEIEYGNNVCLIGSEIVELLFKSHE---- 177

Query: 172 SGGELEQDPVGQIAKIGAHEFTVIGVLAKNSGNIEQGSPIDYSGFTPFSTWQRFHPN--- 228
                  +PVG       + ++++GVL +  G++   S +D +   P     R       
Sbjct: 178 -------NPVGAYVSFFGNRYSIVGVL-EEQGSVGNDSGVDRTILIPVENASRLDQTGGF 229

Query: 229 -QAISGINLEPRVGSDRQALAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFLLR 287
              I+    +P         A  + + ++      L   ++V   +   S + +  +L R
Sbjct: 230 WYTITVSTSDPTKMEYEMGQATGLMRKVREDRVGELDSFEVVKSNNVGESLEEVAGYL-R 288

Query: 288 LQSFLGIIGFITLAVASLGITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITM 347
           +  F   IGFITL  AS+G+ N+M  +V   TR+IG+R A+GATP  IR  +L ++++  
Sbjct: 289 IGGFG--IGFITLLGASVGLMNIMLVSVTERTREIGIRKALGATPKRIRQQFLIEAIVIC 346

Query: 348 GMGGIAGLGVTFAMVRLLAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVAAW 407
            MGG+ G+ V   +  ++A+    G       G  VP L + +  ++ V   ++G+V+  
Sbjct: 347 IMGGVFGVLVGMGIGNIVASFVGPG-------GFLVPWLWMLLAFMICV---LVGLVSGV 396

Query: 408 LPANHAAKVTPLQALQSE 425
           +PA  A+K+ P++AL+ E
Sbjct: 397 IPAIKASKLDPIEALRYE 414