Pairwise Alignments

Query, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., efflux ABC transporter, permease protein from Bacteroides ovatus ATCC 8483

 Score =  115 bits (287), Expect = 3e-30
 Identities = 104/444 (23%), Positives = 191/444 (43%), Gaps = 53/444 (11%)

Query: 5   RQIMQEMAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHVSGGY 64
           ++I   +   KLR  LT  AVAW    +  LL  G G+     ++      N I +  G+
Sbjct: 6   QEIYSTIKRNKLRTFLTGFAVAWGIFMLIVLLGAGNGLIHAFEQSASERAMNSIKIFPGW 65

Query: 65  ATQTHGRFHEGQALSLTEQDSQVLAALPMVKHALPSAEWQELITFADKRSWM--MPYAVK 122
            ++++    EG+ + L  +D      +    H  P+      +  A    W   +  +  
Sbjct: 66  TSKSYDGLKEGRRVQLDNKD------MDATSHYFPNH-----VIKAGATVWQGGVNLSFG 114

Query: 123 SEYQAMNKLRLLPG-----------GRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWF 171
            EY ++N   + P            GR+ N +D  ++RKV+VL  + A  LFN+      
Sbjct: 115 QEYVSLNLSGVYPNHTEVEVVKLFEGRFINEIDIKKRRKVIVLHKKTAEILFNKTH---- 170

Query: 172 SGGELEQDPVGQIAKIGAHEFTVIGVLAKNSGNIEQGSPIDYSGFTPFSTWQRFHP---- 227
                  +P+GQ    G   + V+G+        ++G   D   + PF+T Q  +     
Sbjct: 171 ------TEPIGQFVNAGNVVYQVVGLYN------DKGDSGDSDAYIPFTTLQTIYNKGDK 218

Query: 228 --NQAISGINLEPRVGSDRQALAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFL 285
             N  ++  NLE    ++  A  A  ++VL   +     D   + + + F +    Q+  
Sbjct: 219 LNNLVMTTKNLETVEANE--AFEAHYRKVLGANHRFDPTDHSAIWIWNRFTNYLQQQKGS 276

Query: 286 LRLQSFLGIIGFITLAVASLGITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSL- 344
             L+  + +IG  TL    +G++N+M  TVK  TR+ G+R A+GA P +I    + +S+ 
Sbjct: 277 GMLRIAIWVIGIFTLLSGIVGVSNIMLITVKERTREFGIRKALGAKPLSILWLIIVESVT 336

Query: 345 ---ITMGMGGIAGLGVTFAMVRLLAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVM 401
              I   +G +AG+GVT  M        +    ++       P + + + +   +T+ + 
Sbjct: 337 ITTIFGYIGMVAGIGVTEWMNSAFGNQTMD-TGMWTETVFLNPTVDIRIAIQATLTLIIA 395

Query: 402 GIVAAWLPANHAAKVTPLQALQSE 425
           G +A   PA  A  + P++AL+++
Sbjct: 396 GTLAGLFPARKAVSIRPIEALRAD 419