Pairwise Alignments

Query, 404 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., ABC transporter:Protein of unknown function DUF214 from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  132 bits (332), Expect = 3e-35
 Identities = 108/414 (26%), Positives = 204/414 (49%), Gaps = 48/414 (11%)

Query: 8   SWQTLLAHRLKSVLAITAISWGVISVVILMALGEGFYRAQTESFRFLLQETQMVASGQTS 67
           +W  L++HR++++L +  I  G+ SVV ++A+GEG       + R++L++ Q + S  T 
Sbjct: 266 AWVALISHRMRTLLTMLGIIIGITSVVSIVAIGEG-------AKRYVLKDIQAIGSN-TI 317

Query: 68  EVWQGMPA--RRPIQLTESLMREVAQ----------RPEIQRYSIV-YENREVSITQQRG 114
           EV+ G      + + +    + +VA            P I R  +V Y N +VS T    
Sbjct: 318 EVFPGSDFGDTKSMDIQTLALSDVAALSSEYYIDSATPNIGRNLLVRYRNIDVSAT---- 373

Query: 115 TAIGSMVSGVDRGYFSLAGLKLTLGSRDFSLHDQHNHRRVAILGDHVAATSQL-----KI 169
                 VSGV   YF + G K+ LG   F+  D     +V ++ DH             +
Sbjct: 374 ------VSGVSPSYFQVRGTKMGLGV-GFNKDDARRQAQVVVI-DHNTRIRLFGPKVDPL 425

Query: 170 GDEFKIRGIAFRVIGIMDDESSRFSFGDNQKVFIPSSTFKD--IWDTQPNMMLVLPAQGV 227
           G    +  +   VIG+ +++ + F    N  +++P  T     +  T  + + V    G 
Sbjct: 426 GQVILVGNLPCTVIGVTENKKNIFDTSKNLNIWMPYETASGRLLGQTYLDGITVRVKDGQ 485

Query: 228 SSWALREQLRHTFAQRLHFSPEDQEAVFLPDFGSGVAVITAILRGIQAFLAASGMMTMAV 287
            S  + + +     +R        +  F  +  S +  +    + +   L+   ++++AV
Sbjct: 486 PSKVVEDNVNKLLQKR-----HGTKDFFTYNLDSVMQTVQKTSQSLALLLSLIAVISLAV 540

Query: 288 GILGVANMMFLAVTERTREIGVRLAIGATPQRIQQQFLLEGLLLVVIGALVGLLLAYFGV 347
           G +GV N+M ++VTERTREIG+R+A+GA    I+QQFL+E +++ +IG ++G+ L+ F +
Sbjct: 541 GGIGVMNIMLVSVTERTREIGIRMAVGARQSDIRQQFLVEAVMVCLIGGVIGISLS-FVI 599

Query: 348 LLLNHLGLPTWLGEPVITSTTVWLSMLVTSILALAAAYFPARRAAQLEPVIALS 401
             +  L +  W  + V +  ++  + + ++++ +   + PAR AAQL+P+ AL+
Sbjct: 600 GYVFSLLVKEW--QMVFSLGSIVTAFICSTLIGIVFGFVPARNAAQLDPIEALA 651