Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., ABC-type protease exporter, outer membrane component PrtF/AprF from Pseudomonas fluorescens GW456-L13

 Score =  101 bits (251), Expect = 5e-26
 Identities = 101/430 (23%), Positives = 189/430 (43%), Gaps = 26/430 (6%)

Query: 9   CVLTSLMASS-SAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGS 67
           C+L  LM  +  A A+ ++QAW   + Q P    A    +   +++ + K+ LLP ++ S
Sbjct: 5   CLLFCLMGLALPADAMDLKQAWDLLQFQGPIYQAAVHEKKAGGENRAIGKAGLLPQINAS 64

Query: 68  A---GMNWSESQNG--------SSSYGATIEQTLWDSRKWSALDKAD--ADWVLAQLERN 114
           A    +N ++ Q+G        S      + Q L++ +K +   +    AD+  A  +  
Sbjct: 65  AYDNKVNGTQRQSGIERDLDYDSKGANVRLRQPLFNKQKMAEYRQGQQRADYSNAVFDAK 124

Query: 115 QAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRV 174
                 A +L  +YF +  A   +TLA+ K     + LA A++R   G     +++E   
Sbjct: 125 S--QDAAVRLAESYFDVLLASETITLAKSKLNAFDEQLASAKRRLELGAGTVTDVDESTA 182

Query: 175 NQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAK 234
            +   E+ ++ AQ  L   R +L   I  +   +  +     TP    S  L DWL  A+
Sbjct: 183 RRDLAEAELIEAQDNLVNARRKLEEYIGETPESLTTLRPSFDTPPLQPS-NLQDWLVKAQ 241

Query: 235 DHSPELLIAIQKVAISQIAKQQSQSGYYPSLRASAGYQDGD--------QRNGEFNAGLT 286
             SP L        +++   +++++G++P+L   AGY  G+        QRN   + GL 
Sbjct: 242 TDSPLLHARRYSRNLAEEEVKRARAGHWPTLDFVAGYTAGESQSLSELNQRNRYGSIGLE 301

Query: 287 LSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQ 346
           ++IP+   G   +   +A  N   A  +       +     ++ Q +    ++I   ++ 
Sbjct: 302 VNIPLYSGGGVSALTRQASANSDKASDELDAARQEVITGTTREYQGILSGAKRIRALEKA 361

Query: 347 VTHRDKVLRSKQQLF-DAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQ 405
           V   ++ L S ++ F + G +  SD+++    LF A+H+L      Y   R+ L    G 
Sbjct: 362 VASNERSLASSRKGFKEGGTSTNSDVLNAEELLFVARHDLFDAKLRYLMSRLRLASSVGS 421

Query: 406 LNDNAIAQLS 415
           L D+ I Q++
Sbjct: 422 LGDDDIDQIN 431