Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., TolC family outer membrane protein from Variovorax sp. OAS795

 Score =  102 bits (253), Expect = 3e-26
 Identities = 93/421 (22%), Positives = 179/421 (42%), Gaps = 24/421 (5%)

Query: 20  AFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLS-------------- 65
           A++L + +A+ +A  Q         +     +    A++ LLPS+S              
Sbjct: 19  AWSLDLSEAYGEALVQDSTIRAVRAATDARRERLPQARAQLLPSVSASVSRFRNSLERTS 78

Query: 66  --GSAGMNWSESQNGSSSYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQ 123
             G+  +  +  +  SSS   T+ Q L+  +  +   +A A    A+    +    +  +
Sbjct: 79  PDGAGQLLTANLRYTSSSEVLTLRQPLFRMQLMADYRQARAQVDDAEATLERETQNVGVR 138

Query: 124 LLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTI 183
           +  AYF    A+ +L L   ++         AE+R+ AG     +++E R       +  
Sbjct: 139 VSGAYFEALLAEEHLALVLAQKTAYTTQFDAAEKRFGAGLGTRTDIDEARAALDLNVAQE 198

Query: 184 LNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIA 243
           L A+  L+  R Q+  L+N    ++  +D+       P  A+L+ W+  A+  SPEL   
Sbjct: 199 LEARQNLDFTRRQIQSLVNRPIDRLAPLDSSRMRLIPPVPAQLEAWVAQAETGSPELQSL 258

Query: 244 IQKVAISQIAKQQSQSGYYPSLRASAGYQDGDQ--------RNGEFNAGLTLSIPIDLNG 295
           + +V  ++   +++Q+G+YP+L A A +   D         R    + G+ LSIP+   G
Sbjct: 259 VAQVEAARNEVEKAQAGHYPTLDAVAQWSRSDSDTITSIKTRYTNRSIGVQLSIPLYSGG 318

Query: 296 ATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVLR 355
              S   +A  N L A++    +   L   L ++ + V     ++   +Q V   ++V+ 
Sbjct: 319 HVSSTVRQALANQLRAEEALEAMRRDLSVRLHREFRGVTEGVLKVRALEQAVRSAEQVVI 378

Query: 356 SKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLNDNAIAQLS 415
           S  + F+AG     D+++       A+ +LA   + Y   R+ L  L G      I +++
Sbjct: 379 SNSRSFEAGSRTLPDVLNAEQQKVSAQRDLAQARFIYLMSRVRLQALAGGAKTEVIEEIN 438

Query: 416 G 416
           G
Sbjct: 439 G 439



 Score = 25.8 bits (55), Expect = 0.003
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 150 QLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAELETKRSQL 197
           +LL  A    L G+  S++L E     L ++STI   +A  + +R +L
Sbjct: 5   KLLVFAAAGLLCGQAWSLDLSEAYGEALVQDSTIRAVRAATDARRERL 52