Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., Outer membrane efflux protein from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 80.9 bits (198), Expect = 7e-20
 Identities = 90/401 (22%), Positives = 173/401 (43%), Gaps = 32/401 (7%)

Query: 20  AFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSESQNGS 79
           A  +S+ QA + A  ++P+   A+  + ++E D+  A     P++S        +++  +
Sbjct: 21  AQGISLPQALEAAFARNPELAAAQWEIGVAEGDRQQAGLIPNPTVSWEV----EDTRRET 76

Query: 80  SSYGATIEQTL-WDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYFALAEAQSNL 138
           S+    + Q L    ++ + ++ A      A+LE  +  N+L  +++ A++A A AQ+ L
Sbjct: 77  STTTVMLSQALELGGKRGARIEAASKGQDAARLELERRGNELRAEVVQAFYAAARAQAGL 136

Query: 139 TLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAELETKRSQLS 198
            LA+Q +    + L +AE R  AGK+  VE    +V   + +  +  A+        +L+
Sbjct: 137 ELARQSRTLAERGLEVAEGRVRAGKVSPVEATRAQVQLAETDLLVRRAETLKINSNRELA 196

Query: 199 ILINASAPQVDEVDTQTPTP-SWPFSAELDDWLTAAKDHSPELLIAIQKVAISQIAKQQS 257
               +     + +D    +P   P SA+    L  A + S EL +A  ++   + A    
Sbjct: 197 RTTGSPLASFERLDYSDLSPGKLPPSAK----LLTALNQSAELRLAQTQIEQREAALGSE 252

Query: 258 QSGYYPSLRASAGYQDGDQRNGEFN-AGLTLSIPI-DLN-GATRSDNEKAHLNWLMAQQQ 314
           ++   P L  S G Q   +     N  GL++ +P+ D N G   + + +A         Q
Sbjct: 253 RAKRIPDLTVSVGSQYSREERERVNVVGLSMPLPLFDRNQGNVLAASRRA--------DQ 304

Query: 315 QRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVLRSKQQL--------FDAGLA 366
            R +   +   LR Q Q    +W   T A Q+V   D+V+    Q         F+ G  
Sbjct: 305 SRDLRNAVELKLRTQTQSALDQW---TTAAQEVESFDRVILPAAQRAVDTATRGFEMGKF 361

Query: 367 EASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLN 407
              +++D   +L  A++       +    R+ + ++ G LN
Sbjct: 362 GFLEVLDAQRTLISARNQYLESLATATEARVAIERIHGDLN 402