Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., Type I secretion outer membrane protein, TolC from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 70.9 bits (172), Expect = 8e-17
 Identities = 74/398 (18%), Positives = 159/398 (39%), Gaps = 26/398 (6%)

Query: 15  MASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNW-- 72
           + S+SA+++ + + +++A+ + P    A L  Q +   +  A   LLP ++ +   N   
Sbjct: 32  VTSASAYSVDLMKLYREARLEDPRMLSAYLRAQSAVDSERDAFGGLLPQVTANGSYNRIL 91

Query: 73  --SESQN---GSSSYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSA 127
              ++Q     +SSY   + Q L++ + W A  KA +       +   A  +    L   
Sbjct: 92  RKDDTQREIYNNSSYSLNLTQYLYNKQAWEAYQKAKSTTEQKGHQAEDAQAEATVDLAKR 151

Query: 128 YFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQ 187
           YF    A   L L   ++    + L      Y        +L +L+       +  ++A+
Sbjct: 152 YFQALSADDELELIMAERRATQKSLDRVSAMYDKKMAVVTDLLDLKARVDLLAAQEVDAR 211

Query: 188 AELETKRSQLSILINASAPQV-----DEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLI 242
            ++   R+ LS ++     +      +++  Q P+ S      +D W+  A D +P L  
Sbjct: 212 NQIRLSRAALSEIVGRPITEPLSRIRNDIALQAPSKS------MDTWVAQAIDSNPLLKA 265

Query: 243 AIQKVAISQIAKQQSQSGYYPSLRASAGYQDGD--------QRNGEFNAGLTLSIPIDLN 294
               + ++  A ++ + G+YP+L  + G Q  D         R+  + A + + +PI   
Sbjct: 266 RESSLDVANAAVREGKGGHYPTLTFTLGAQQSDVGYDNTLSPRSDSYVATIGVRVPIYSG 325

Query: 295 GATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVL 354
           G+T +     +   L  +Q    V   + +             ++I      +   ++  
Sbjct: 326 GSTSARVRGLYNEQLATEQDVESVRRQVVKETTNAYLTAFSSVEKIRANKNALASAEQSS 385

Query: 355 RSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSY 392
            + Q+ F  G+  A D++    + F+A+ +L    Y +
Sbjct: 386 IAAQKAFSYGVVNAVDVLTSVQNEFKARRDLLRAQYDF 423