Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., Type I secretion outer membrane protein, TolC family from Sphingobium sp. HT1-2

 Score = 79.0 bits (193), Expect = 3e-19
 Identities = 101/457 (22%), Positives = 179/457 (39%), Gaps = 59/457 (12%)

Query: 6   LTACVLTSLMASSSAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLS 65
           L  C   +++A   A A  + +AWQ A    PD   A+      ++    A++   PS+ 
Sbjct: 4   LFLCTAAAMLAPP-AHATDLMEAWQAAAAHDPDHLGAQAERDAGQEAAVQARALKRPSVQ 62

Query: 66  GSAGMNWSESQ------------------NGSSSYGATIEQTLWDSRKWSALDKADADWV 107
              G  ++ ++                  +G ++ G    Q L+D+ K +   +      
Sbjct: 63  LQGGYQYNVTETNARFPEELDPVFTGSRSSGRATVGVQAVQPLYDASKHAQSIQLREKAA 122

Query: 108 LAQLERNQAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGA-QLLAIAEQRYLAGKIKS 166
            A ++      QL  ++  AYF +  A+  L+ + Q Q D A Q    A+ R+ AG+ + 
Sbjct: 123 GADVQFAGEQQQLILRVSQAYFKVLAAEDRLS-SYQAQVDAAEQQRRGAQARFDAGRARI 181

Query: 167 VELEELRVNQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAEL 226
            ++ E    +   E+  + A+AEL   R+  S L    A  +D        P+  F+A L
Sbjct: 182 TDVREAEARRDASEAQRIGAEAELAYARADFSELTGLPAEGLDR-------PAGNFAAPL 234

Query: 227 DDWLTAAKDHSPELLIAIQKVAISQIAKQQSQSGYY-----PSLRASAGYQ-----DGDQ 276
                 A     E    + K A  Q     +    Y     P +   AGYQ      G+ 
Sbjct: 235 PLVTLEASIEQAERQSPLVKAAEHQAKAAGADIDRYGLTGRPVVEGVAGYQGQYRLGGEG 294

Query: 277 RNG-------EFNAGLTLSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQ 329
            NG         +AGL ++IP+   GA +S   +A  N   A + +R ++    ++ R Q
Sbjct: 295 GNGIIPDRIQSASAGLRITIPLYAGGAIQSKEREARAN---AVKAERALD-AARRDARLQ 350

Query: 330 IQQVEIEWQQITMADQQVTHRDKVLRSKQQLFDA-------GLAEASDLIDVHNSLFRAK 382
            QQ    W  ++   +++   +   RS     DA       G+    D+++  +  F   
Sbjct: 351 AQQA---WHAVSTGARRIAALNTANRSAGLQQDAANTGREVGIRTQDDVLNAQSQSFSTD 407

Query: 383 HNLASRWYSYWRQRIELLKLTGQLNDNAIAQLSGAFR 419
            +     Y Y   R++L   TG L D  +A ++   +
Sbjct: 408 RDRRQAIYDYMTARLQLAAATGDLGDETLAGVNALMK 444