Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

 Score = 98.6 bits (244), Expect = 4e-25
 Identities = 91/426 (21%), Positives = 170/426 (39%), Gaps = 35/426 (8%)

Query: 19  SAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSE---- 74
           S     +   +Q+A   + D   A        +    A++ LLP+LS  A M  +     
Sbjct: 26  STVKTDLVSVYQEAVDNNADLAAARADYGARREVVPQARAGLLPNLSAGAEMMNTRTKLD 85

Query: 75  -----SQNGSSSYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYF 129
                S    +S+ AT+ Q ++ + +W  L  A+A    A LE +     L  Q    YF
Sbjct: 86  EPSITSNRSGNSWSATLAQPIFRADRWFQLQAAEAVNEQAALELSATEQNLILQTAQNYF 145

Query: 130 ALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAE 189
           A+  AQ NL   + ++A   + L  + +R+  G     ++ + + +     +  + A+ +
Sbjct: 146 AVLRAQDNLAATKAEEAAFKRQLDQSNERFDVGLSDKTDVLQSQASYDTARANRIIAERQ 205

Query: 190 LETKRSQLSILINASAPQVDEV----DTQTPTPSWPFSAELDDWLTAAKDHSPELLIAIQ 245
           ++     L  L N     +  V      Q PTP+     +   W+  A   +  LL    
Sbjct: 206 VQDAFEALVTLTNREYTSIQGVVHSLPVQVPTPN-----DAKAWVETAGRQNLNLLATNY 260

Query: 246 KVAISQIAKQQSQSGYYPSLRASAGYQDGDQRNGEF-----------------NAGLTLS 288
            V+ ++   +Q ++G+ P+L A A YQ GD  +  F                 + GL L+
Sbjct: 261 AVSAAEETLRQRKAGHAPTLDAVAKYQKGDNDSLGFTNPSQLGVRYSGDVEQTSVGLQLN 320

Query: 289 IPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVT 348
           IPI   G T S   +A+     ++QQ+  +   + +N R   + V  + +Q+    Q + 
Sbjct: 321 IPIYSGGLTSSQVREAYQRLSQSEQQRESLRRQVVENTRNLHRAVNTDVEQVQARKQSII 380

Query: 349 HRDKVLRSKQQLFDAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLND 408
                L + +  +  G     D++D    L+ +  +  +  Y Y    + L +  G L+ 
Sbjct: 381 SNQSALEATEIGYQVGTRNIVDVLDAQRQLYTSVRDYNNSRYDYILDNLSLKQAAGTLSP 440

Query: 409 NAIAQL 414
             +  L
Sbjct: 441 QDLQDL 446