Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., putative Outer membrane efflux protein from Pseudomonas putida KT2440

 Score =  118 bits (295), Expect = 4e-31
 Identities = 106/430 (24%), Positives = 198/430 (46%), Gaps = 26/430 (6%)

Query: 9   CVLTSLMASS-SAFALSIEQAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGS 67
           C++  L+  +  A A+ ++QAW   + Q P    A    Q   +++ + ++ LLP ++ S
Sbjct: 15  CLMVCLLGVAVQASAMDLKQAWDLLQYQGPIYRAAVHEKQAGGENRAIGEAGLLPQINAS 74

Query: 68  A---GMNWSESQNGSS------SYGATIE--QTLWDSRKWSALDKAD--ADWVLAQLERN 114
           A    +N S+ QNG        S GA +   Q L++ +K +   +    AD+ +A  +  
Sbjct: 75  AYFNQVNGSQRQNGQDNDLDYDSKGANVRLRQPLFNKQKMAEYRQGQQRADYSVAVFDAK 134

Query: 115 QAYNQLAHQLLSAYFALAEAQSNLTLAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRV 174
                 A +L  AYF +  A   +TLA+ K +   + LA A++R   G     +++E   
Sbjct: 135 S--QDAAVRLADAYFDVLLASETITLAKAKLSAFEEQLASAKRRMELGAGTITDVDESVA 192

Query: 175 NQLDEESTILNAQAELETKRSQLSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAK 234
            +   E+ +++AQ  L   R +L   I  +   +  +     TP       L +WL  A+
Sbjct: 193 RRDLAEADLIDAQDNLVNARRKLEEYIGETPQALTTLQAGFSTPPL-MPGNLQEWLVKAQ 251

Query: 235 DHSPELLIAIQKVAISQIAKQQSQSGYYPSLRASAGYQDG--------DQRNGEFNAGLT 286
             SP +       A+++    +++SG+YP+L   AGY  G        +QRN   + GL 
Sbjct: 252 ADSPLIHARRHSYALAEEEVNRARSGHYPTLDFVAGYTAGSSQSISELNQRNHYSSIGLE 311

Query: 287 LSIPIDLNGATRSDNEKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQ 346
           L+IP+   G+T + + +A  N   A  +       +  N  ++ + V+    +I   ++ 
Sbjct: 312 LNIPLYSGGSTSALSRQASANSSKALDELDATRQEVISNTTREYRGVQSGALRIQALEKA 371

Query: 347 VTHRDKVLRSKQQLF-DAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQ 405
           V   ++ L S ++ F + G +  SD+++    L+ A+H+L     +Y   R+ L    G 
Sbjct: 372 VASNERSLTSTRKGFKEGGTSTNSDVLNAEELLYDARHDLFEAKLNYLMSRLRLASSVGS 431

Query: 406 LNDNAIAQLS 415
           L D+ I Q++
Sbjct: 432 LGDDDIEQIN 441