Pairwise Alignments

Query, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., Outer membrane protein TolC from Pseudomonas sp. RS175

 Score = 79.3 bits (194), Expect = 2e-19
 Identities = 86/403 (21%), Positives = 167/403 (41%), Gaps = 22/403 (5%)

Query: 27  QAWQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSES-------QNGS 79
           Q  Q+A+   P    A+   +  + ++  A   LLP L+ S+ +N S         Q   
Sbjct: 31  QLHQEAQGADPRILRAQALTRSGDGNERAALGRLLPQLNASSSVNRSRRDDDLGRIQYNG 90

Query: 80  SSYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYFALAEAQSNLT 139
                 + Q L+D + W +  K       +Q E +    Q +  L   YFA+  A+  L+
Sbjct: 91  KRMAVVLNQVLYDPQVWRSYQKYVELAQKSQYESDDTQVQSSIDLSERYFAVLAAEDELS 150

Query: 140 LAQQKQADGAQLLAIAEQRY---LAGKIKSVELEELRVNQLDEESTILNAQAELETKRSQ 196
           L + + A   + L   +  Y   +A    +++LE  RV+ L  +   + A  +++  R  
Sbjct: 151 LVRSELAATERNLKRIKALYARQMAMVTDTLDLEA-RVDALKADE--IEAGNKVQVSREA 207

Query: 197 LSILINASAPQVDEVDTQTPTPSWPFSAELDDWLTAAKDHSPELLIAIQKVAISQIAKQQ 256
           +S L+     +  +     P  + P     DDW+  A D +P L      +  ++ A  +
Sbjct: 208 ISELVGRDVQEPLKRIGDNPAFTLPPQTP-DDWIRMALDSNPALHAREHNIRAAEAAIGE 266

Query: 257 SQSGYYPSL-------RASAGYQDG-DQRNGEFNAGLTLSIPIDLNGATRSDNEKAHLNW 308
           +++G+ P L       R+  GY+     R+    A L L +P+   G+T +    +  + 
Sbjct: 267 AKAGHLPRLGLNLTAQRSDIGYEGALTPRSDNLVASLDLQVPLYSGGSTSARVSSSESDR 326

Query: 309 LMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVLRSKQQLFDAGLAEA 368
            +AQQ+   +   + +  R     +  E  +I    + +   +K   + ++ F  G+  A
Sbjct: 327 EVAQQELEALRRQVVKETRTAYLGMMAELSRIKATRRALESAEKSRTATEKAFGYGVKNA 386

Query: 369 SDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLNDNAI 411
            D++D     FRA+ +     Y +    + L + +G+L D  I
Sbjct: 387 VDVLDSIKDEFRARRDFYQSQYRFVTSLLVLHRWSGRLRDGDI 429